Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029516 [exp] 111 / 1e-31 AT1G07985 69 / 3e-15 Expressed protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266500 [exp] 42 / 2e-05 AT1G07985 73 / 3e-17 Expressed protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039608 pacid=23165344 polypeptide=Lus10039608 locus=Lus10039608.g ID=Lus10039608.BGIv1.0 annot-version=v1.0 ATGATGAGGCAGCTGGAGGAGATAAGGGGGAGCCGTAGGTGGTCTTCCAAGAGCTCTCCGAGGTCATACCCGTCAACTCCGACGAGTGCGACCACAGGAG GGAGCCATGCGACGTCGTTTACTACGGACAATACACCATCGTCGCCAAAGAGTATGGAGAAACGGTGTCGTCCGCTGGAGAGCGTTATGGCCGAGGTTGG GATGAAAGGAAACCTCATCGACCGTCTTCACTTTGTCGAGGACCGCATGCTTAAGATGGAGGATGAGCTAGAGGAGGATAGGAAGAAATTAGATGGTAAC GATCAGGAGTGTGTGACTAGTCCGAGGTCTTCAGAGAAGAAGAAAGGGTTGAAAGGACTGGTTCGCAAGATAATCCATCCACATCATCATCACCACCACC ATAACGATCACCACCACCATGGTAATAGCAGTCCAAGTCATCGAGACAGCTTGTCATGA
AA sequence Show only first row Show all	>Lus10039608 pacid=23165344 polypeptide=Lus10039608 locus=Lus10039608.g ID=Lus10039608.BGIv1.0 annot-version=v1.0 MMRQLEEIRGSRRWSSKSSPRSYPSTPTSATTGGSHATSFTTDNTPSSPKSMEKRCRPLESVMAEVGMKGNLIDRLHFVEDRMLKMEDELEEDRKKLDGN DQECVTSPRSSEKKKGLKGLVRKIIHPHHHHHHHNDHHHHGNSSPSHRDSLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039608 [exp]	0	1
AT4G17250			unknown protein		Lus10000731 [exp]	2.0	0.8120
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	5.8	0.7904
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10018221 [exp]	11.3	0.7416
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	20.4	0.7746
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	25.1	0.7770
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	30.9	0.7353
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	33.2	0.7264
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	43.3	0.7579
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	45.7	0.7516
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	53.0	0.7166

Compare expression of checked genes

Lus10039608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.