Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 590 / 0 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 529 / 0 MATE efflux family protein (.1.2) AT2G38330 332 / 7e-108 MATE efflux family protein (.1) AT4G38380 323 / 6e-104 MATE efflux family protein (.1) AT2G21340 67 / 1e-11 MATE efflux family protein (.1.2) AT4G39030 47 / 4e-05 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029517 [exp] 934 / 0 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 726 / 0 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 523 / 0 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 520 / 0 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 511 / 1e-175 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 339 / 9e-110 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 311 / 4e-99 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 290 / 4e-91 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 266 / 6e-83 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061100 [exp] 703 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 697 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 576 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 575 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 343 / 1e-111 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 329 / 5e-106 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 328 / 2e-105 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 307 / 8e-98 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G122900 [exp] 67 / 1e-11 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 59 / 5e-09 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10039609 pacid=23165274 polypeptide=Lus10039609 locus=Lus10039609.g ID=Lus10039609.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAAGGTTCTTTACAGCATGCTGCTCATCCTGTTGCTGAGAAGAAATGCAACTTCCCAATCTTGATCTTCTTCAGAGATGCAAGGCTTGTAT TCAAGATGGATTCGCTTGGTAGGGAGATACTAAGGATTGCTGTCCCAGCTGCAATGGCTTTAGCAGCTGACCCTGTTGCTTCCTTGATTGACACTGCTTT CATTGGCCACTTAGGACCTGTGGAGATAGCTGCTGTTGGAGTTTCGATTGCCATATTTAACCAAGCATCAAAGGTCACCATATTCCCATTGGTGAGCATT ACAACCTCTTTTGTTGCTGAGGAGGAAACTGTGCAGAGAATCAGCAATAATGAACCACTGAAAGCAGAGGAAATGGCAGAGTCAAAAGCAGAGGAAGATC ATGTTCTCCATCAAGATTTGGAGGGAGGTTTAAGCTCAACACTACAACAGGAGTCACAGGAGAAAGATGATAAGATGGAGTTGCCTTCAGCACCTGCAAC TGATGGAAATGATAGTAACAAGAAGGTGAAGAGGCATATCCCTTCAGCATCCACAGCATTGGTTGTTGGTGGATTCCTTGGTATCATTCAAGCTGTTGTA CTTTTCTTCGCTGCAAACCCTCTTTTGCAAGTTATGGGGGTCAAACCTGGTTCAGCAATGCTCATCCCAGCACACAAGTACTTGACTTTGAGGTCACTTG GATCACCAGCAGTTCTTCTTTCACTGGCGATGCAAGGAGTTTTCCGCGGTTTGAAGGACACTAAAACTCCATTGTATGCCACTGTTGCTGGAGATGTAGC AAATATCATTCTGGACCCAATATTCATCTTTCTTTGCAAACTGGGAGTCAGTGGTGCAGCCATCGCTCATGTTATTTCTCAGTACTTGATTACAGTGATC CTCCTGGCGAAACTCATGAAAATGATTGATCTGATGCCTCCAAGCATGAAAGACTTGCAATTTAGCCGGTTCCTTAAGAACGGTTTTCTGTTACTAGCTA AAGTGATAGCAGCAACAATCTGTGTGACCTTTGCTGCATCGAGAGCTACGCGGCTGGGATCAACTCCTATGGCTGCTTTCCAAATTTGCTTACAAGTCTG GTTGACATCTTCACTTCTTGCTGATGGATTGGCTGTTGCTGGACAGGCCATAATTGCTACTGCATTTGCTGAGAAGGACTATCATAAGGCAACCAGTGCT GCAACTAGAGTCCTGCAAATGAGTTTCGTTCTTGGGTTGGGGCTAGCTGGAGTAGTTGGAGCTGGTTTATACTTTGGAGACACCATTTTCTCTAAAGATC CAAATGTTCTTCACATCATAAGCATAGGCATCCCGTTTGTTGCAGCTACACAACCAATAAACTCAATTGCGTTTGTGTTCGATGGAGTGAACTTTGGGGC ATCAGATTTCAGGTTCTCATCCTATTCTATGGTTTTGGTAGCCATGGCAACCCTTCCAGCAGTATACCTTCTGTCAAACTCAGGCGGATTTATCGGGATT TGGGTGGCTCTAAGCATCTTCATGGGACTAAGAACATTTGCTGGAATTTGGAGGATGGGGACTGCAACTGGACCTTGGCGATTTCTCAAGGGGCCAAGTT CAACATAG
AA sequence Show only first row Show all	>Lus10039609 pacid=23165274 polypeptide=Lus10039609 locus=Lus10039609.g ID=Lus10039609.BGIv1.0 annot-version=v1.0 MAEEGSLQHAAHPVAEKKCNFPILIFFRDARLVFKMDSLGREILRIAVPAAMALAADPVASLIDTAFIGHLGPVEIAAVGVSIAIFNQASKVTIFPLVSI TTSFVAEEETVQRISNNEPLKAEEMAESKAEEDHVLHQDLEGGLSSTLQQESQEKDDKMELPSAPATDGNDSNKKVKRHIPSASTALVVGGFLGIIQAVV LFFAANPLLQVMGVKPGSAMLIPAHKYLTLRSLGSPAVLLSLAMQGVFRGLKDTKTPLYATVAGDVANIILDPIFIFLCKLGVSGAAIAHVISQYLITVI LLAKLMKMIDLMPPSMKDLQFSRFLKNGFLLLAKVIAATICVTFAASRATRLGSTPMAAFQICLQVWLTSSLLADGLAVAGQAIIATAFAEKDYHKATSA ATRVLQMSFVLGLGLAGVVGAGLYFGDTIFSKDPNVLHIISIGIPFVAATQPINSIAFVFDGVNFGASDFRFSSYSMVLVAMATLPAVYLLSNSGGFIGI WVALSIFMGLRTFAGIWRMGTATGPWRFLKGPSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10039609 [exp]	0	1
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	2.0	0.8627
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	2.4	0.8459
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	4.5	0.8174
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	4.9	0.8354
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	6.0	0.8434
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	6.9	0.7535
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	15.7	0.7875
					Lus10036790 [exp]	15.7	0.8169
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	16.9	0.7543
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	19.0	0.7452

Compare expression of checked genes

Lus10039609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.