Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52110 206 / 2e-63 unknown protein AT4G17000 42 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029522 [exp] 665 / 0 AT3G52110 231 / 5e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061900 [exp] 334 / 5e-113 AT3G52110 267 / 1e-87 unknown protein Potri.001G267600 [exp] 311 / 3e-104 AT3G52110 264 / 4e-86 unknown protein Potri.006G054900 [exp] 114 / 1e-29 AT3G52110 115 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039611 pacid=23165000 polypeptide=Lus10039611 locus=Lus10039611.g ID=Lus10039611.BGIv1.0 annot-version=v1.0 ATGGAACCCGCGAAGATAGACTGGAAGAGAATCGAATCGGTTTATGAAGAAGACAGGCTCTACGAGACTATCAAAGCTCCCAAATGGGTCGATTTCTTGG CCCCTGAAGATGATTCTGATTACGCCGCCGATGTCGCTTGGTTCTGCAGACCAGACTGTAACCACCCTAAGACGGCTGAAGATTTCTTGAAGTTCACTCC TACCTCATCAAAGCATTCAAGATCCGCCACTAAAACTCGGAGCCCATTTGGCGACTTGAATAAAAGGAATGCAAGATTGAAGAGGAGAGGGCAAACTCAG TCTTCAATCGCATCCTTCGATGAAAGGGATTCAAGTCAAGACAGTGAAAACCAGAACCCTAATTCTTCAACAACCCCACCAAATTTCCAGATCAAGTCCA TGAAATCGTTTTTGAAATCAAGCTCTGAAAGGAAGAGACCAGTGACTGAGGATGCATCAGAAGACAATGTCGTGCGTACACTGAAACCCACATTGTCAGC AAGGAATTTGTTCGGTGGGAAAGATATACTAGGTCATATTTCTGAGTTCTGCAATGAACTGAAGAAGTTGACAATGAGATCAAAGGGGAGAGATAATGAT GAGAGCTTCAAGTCCAAGGAAAACCAAGTGGTGGAAGACAAATGTGCGGTTGTGAAGAAAGAAGAGGATCACAGAGAGGTACTGGGCAATTTGGATTTGA AAGAAAAACAGAAGACGCCACCGCCTCAAGTGGTAAAATTAGACAAGAGTGGGGGAGGGAGTGGGAAGTCAAGTGGAAAGGAGAAGCCCCGGAGGATAAA AAGGTTGGATGATGCAGAGAACATCCCAGTCTGCCTAAACCTTAATTTGGAAATCGTGAAACCACAGCTCAAAGATGAAGAGCGGTTGCTGCAAATTCGG ACGAATCCTCCTTCTCCGCAATGCTTCTCTGGTCATGCATCTGCCAAGACCACCACCCCATCCAAAGCTCCAAAATCCAGATTGAATGAGAGATCAATTC TTCAGGAAGTGAAGCAGCAGAATAAGGAAGTGATCAAAGACGAAAACCATGAGAAGAGTGTGGGAGGAAGTTTTGCCATTGTCGAAGGTAAAGAATCAAA AACAGCTCTAGATATGTTCTGGTTCCTGAAGCCTTGCACACTCTCCAGCTAA
AA sequence Show only first row Show all	>Lus10039611 pacid=23165000 polypeptide=Lus10039611 locus=Lus10039611.g ID=Lus10039611.BGIv1.0 annot-version=v1.0 MEPAKIDWKRIESVYEEDRLYETIKAPKWVDFLAPEDDSDYAADVAWFCRPDCNHPKTAEDFLKFTPTSSKHSRSATKTRSPFGDLNKRNARLKRRGQTQ SSIASFDERDSSQDSENQNPNSSTTPPNFQIKSMKSFLKSSSERKRPVTEDASEDNVVRTLKPTLSARNLFGGKDILGHISEFCNELKKLTMRSKGRDND ESFKSKENQVVEDKCAVVKKEEDHREVLGNLDLKEKQKTPPPQVVKLDKSGGGSGKSSGKEKPRRIKRLDDAENIPVCLNLNLEIVKPQLKDEERLLQIR TNPPSPQCFSGHASAKTTTPSKAPKSRLNERSILQEVKQQNKEVIKDENHEKSVGGSFAIVEGKESKTALDMFWFLKPCTLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52110			unknown protein		Lus10039611 [exp]	0	1
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	3.2	0.9741
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	3.5	0.9627
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	4.2	0.9737
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	6.0	0.9728
AT5G66150			Glycosyl hydrolase family 38 p...		Lus10025960 [exp]	6.0	0.9491
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	7.5	0.9565
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	7.7	0.9520
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	8.2	0.9659
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	8.8	0.9542
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	8.9	0.9481

Compare expression of checked genes

Lus10039611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.