Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09230 438 / 3e-153 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7) AT5G55760 84 / 4e-17 SRT1 sirtuin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029531 [exp] 558 / 0 AT5G09230 543 / 0.0 sirtuin 2 (.1.2.3.4.5.6.7) Lus10029527 [exp] 178 / 1e-51 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 79 / 8e-16 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10016619 [exp] 77 / 4e-15 AT5G55760 682 / 0.0 sirtuin 1 (.1) Lus10019739 [exp] 67 / 2e-12 AT3G06240 53 / 5e-08 F-box family protein (.1) Lus10019738 [exp] 62 / 4e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068400 [exp] 443 / 7e-155 AT5G09230 487 / 4e-173 sirtuin 2 (.1.2.3.4.5.6.7) Potri.001G368100 [exp] 84 / 2e-17 AT5G55760 683 / 0.0 sirtuin 1 (.1) Potri.017G012200 [exp] 44 / 0.0001 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0085 [flax] [poplar] FAD_DHS PF02146 [flax] [poplar] SIR2 Sir2 family
Representative CDS sequence Show only first row Show all	>Lus10039614 pacid=23165244 polypeptide=Lus10039614 locus=Lus10039614.g ID=Lus10039614.BGIv1.0 annot-version=v1.0 ATGAGAACTTCGTGCCGTATCACTGTCCCAGGGACCTCGTCTGCTGTTACTGGGGAAAACCAGCAGCACCCACCTAACTTTTTGAGGAACAAGAAGACGG TTCCTGATTCTGAGCCTCCAACCATTCGAGATGTCAATCTTTTCACCAAGCTTATGGTCTTGACTGGAGCTGGAATGAGTACTGAGTGTGGAATTCCTGA TTACAGAAGCCCAAATGGAGCTTCAGTTCTGGATTCAAACCGATTACCCATCAGGAGATATTGGGCAAGAAGCTATGCCGGTTGGAGACAGTTTACTGCT GCGCAGCCTGGGGCTGCTCATTTTGCTTTAGCATCATTAGAGAAGGCTGGCAGAATAAATTTCATGGTCACACAAAATGTTGATAGACTGCATCATCGTG CTGGGAGCAGCCCGTTGGAAATACATGGTACTGTATATTCTGTGATTTGTCTAGACTGTGGCTTTTCCTTCAACTGGGAGCTATTTCAAGAACAATTGAA GGACCTTAATCCAAAGTGGGCAGAAGCAATTGAAAGCTTGGATCGTAGGGTTCCTGCATCAGATAAGCGCTTTGGCATGAAACAGAGGCCTGATGGTGAT ATAGAGATTGATGAGAAATTCTGGGAACAGGATTTCCATATACCTACATGCCAGAAATGCAATGGAGTCCTCAAGCCTGATGTAGTTTTCTTCGGTGATA ATGTACCAAAGGAAAGAGCAGAAAAAGCAATGACAGCAGCAAAAGAATGCGATGCGTTTTTGGTCCTAGGATCATCTGCGATGACAATGTCAGCGTTCCG ACTTGTCAAAGCGGCACATGAGGCAGGCGCTGCTACAGCAGTGGTGAACTTGGGTGTAACTCGAGCAGATGATATCGTGGCCTTGAAGATAAATGCAAGA CTAGGGGAGGTAAACATTGAGATGGGAAAGGACTACCATCTTGGTGTGCATCTTAATGGAATCTGTTATTGGCTAGCAACTATACCAAACCCTGGCCAAA ACACCGTCAACAACGTAATTGTCTCATTTTCGTTGAGCACTGAGACGCTGGAGGAAATGCATATTCCCGTAGATGACTCAATGCTAGAATCCCATGTTGA ACTTTCCAGTTGCTGCAAGGGCTTACTTTCTGTTGTGTTCTACGAGTATCAGGATGAATTGGGATTAGACTGTGCGATCATTTGGGTGAGGAAAGAAGGG TGTTGGATGAAGCTAGCCACTATGATCGCACAGCTTTTGCTGGTTCCTTCCATGAGAAAGAGTGCCTGGTTCGGTATGACCTGA
AA sequence Show only first row Show all	>Lus10039614 pacid=23165244 polypeptide=Lus10039614 locus=Lus10039614.g ID=Lus10039614.BGIv1.0 annot-version=v1.0 MRTSCRITVPGTSSAVTGENQQHPPNFLRNKKTVPDSEPPTIRDVNLFTKLMVLTGAGMSTECGIPDYRSPNGASVLDSNRLPIRRYWARSYAGWRQFTA AQPGAAHFALASLEKAGRINFMVTQNVDRLHHRAGSSPLEIHGTVYSVICLDCGFSFNWELFQEQLKDLNPKWAEAIESLDRRVPASDKRFGMKQRPDGD IEIDEKFWEQDFHIPTCQKCNGVLKPDVVFFGDNVPKERAEKAMTAAKECDAFLVLGSSAMTMSAFRLVKAAHEAGAATAVVNLGVTRADDIVALKINAR LGEVNIEMGKDYHLGVHLNGICYWLATIPNPGQNTVNNVIVSFSLSTETLEEMHIPVDDSMLESHVELSSCCKGLLSVVFYEYQDELGLDCAIIWVRKEG CWMKLATMIAQLLLVPSMRKSAWFGMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10039614 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	14.1	0.8503
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	17.7	0.8371
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	25.4	0.8375
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	27.4	0.8220
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	28.0	0.8486
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	30.9	0.8301
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	33.3	0.8445
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	35.1	0.8375
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	42.7	0.8361
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	44.4	0.8315

Compare expression of checked genes

Lus10039614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.