Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28605 226 / 7e-74 Photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029532 [exp] 454 / 2e-163 AT2G28605 248 / 4e-83 Photosystem II reaction center PsbP family protein (.1) Lus10038658 [exp] 209 / 1e-68 AT2G28605 116 / 1e-33 Photosystem II reaction center PsbP family protein (.1) Lus10009159 [exp] 130 / 1e-37 AT2G28605 98 / 3e-26 Photosystem II reaction center PsbP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100800 [exp] 265 / 7e-89 AT2G28605 266 / 2e-90 Photosystem II reaction center PsbP family protein (.1) Potri.005G068500 [exp] 167 / 5e-51 AT2G28605 173 / 4e-54 Photosystem II reaction center PsbP family protein (.1) Potri.010G210200 [exp] 51 / 3e-07 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10039615 pacid=23165321 polypeptide=Lus10039615 locus=Lus10039615.g ID=Lus10039615.BGIv1.0 annot-version=v1.0 ATGCTCGTGGGCATGGAGATTAGCTTCTCTGCCTTGAGCTGCTATCACTACTACCCAACAAAGCAGAATTGTAAAAGCCCTTCTCCTTCCTCTCACAGGT TCAAACATCTATCCTCAGTATCATTTTTGGCTTCAGCTACTTTACCCACCCAAAACAGCAATCAACCAGGAAGCAGCAATAGACTGAAAGTGGGAGAAGC TATACTTCCTTCTCCTCTAAGGAGAAAACTGAATCTCTCACTTGTTGGATTGACTGTCATTCTTAATGGGTATTGGTCAATCTCATCTACCACCACCATT TTGGCTGAAGAAGAGTTGAAGCTGGAAAGATACACTGATTATCAAGAGGGCTTCACTCTGCTCAGGCCTGCTTCCTATTCCAAGGTGGATAAAGCTGGAG CAACTTTGCTGTTTGAGGAGATGAAGAAAGCAAGCAACAATGTTGGGGTTGTGGTAATCCCAGTTCGTCTTAAGAGCCTTTCTGAATTTGGGACTCCTCA ATTTGTTGCAGACAAGCTTATACAAGCCGAAAAGCGCAAGGAGAGTACGAAGGAAGCAGAGGTAATCGAGGCAACAGAAAGATCTGGAGGTGGAGGGCTA CCGGTGTACGAATTTGAGTATAAAGTTGACAGCACTAGAGGAGGGATTAAGAGGATCTTCTCAGCTGCATTTGTTTCCACTAAGAAGCTTTATCTCTTAA ATATTGTTCATTCCGACAACCCAGAGAGTCCACTTGATGCTCCTAGTAGAATGATAAGTGCCTACATTGTCTTTAGTGGTAACCAAAATGGGAGAACTTC TGCATCATTGAAAGAGGACAGGATCAGAGAATATGATGACGGGTCAGAAGTTCTGATCCTGCTTAAGTAA
AA sequence Show only first row Show all	>Lus10039615 pacid=23165321 polypeptide=Lus10039615 locus=Lus10039615.g ID=Lus10039615.BGIv1.0 annot-version=v1.0 MLVGMEISFSALSCYHYYPTKQNCKSPSPSSHRFKHLSSVSFLASATLPTQNSNQPGSSNRLKVGEAILPSPLRRKLNLSLVGLTVILNGYWSISSTTTI LAEEELKLERYTDYQEGFTLLRPASYSKVDKAGATLLFEEMKKASNNVGVVVIPVRLKSLSEFGTPQFVADKLIQAEKRKESTKEAEVIEATERSGGGGL PVYEFEYKVDSTRGGIKRIFSAAFVSTKKLYLLNIVHSDNPESPLDAPSRMISAYIVFSGNQNGRTSASLKEDRIREYDDGSEVLILLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28605			Photosystem II reaction center...		Lus10039615 [exp]	0	1
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	8.7	0.8936
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	9.2	0.8678
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	13.6	0.8888
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	14.1	0.8926
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	16.1	0.8796
AT2G42130			Plastid-lipid associated prote...		Lus10004171 [exp]	16.7	0.8355
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	22.3	0.8759
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	23.7	0.8827
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10039589 [exp]	29.2	0.8735
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	29.9	0.8757

Compare expression of checked genes

Lus10039615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.