Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52430 365 / 1e-118 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 125 / 5e-30 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 122 / 8e-29 alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 106 / 6e-24 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT5G18640 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 44 / 0.0005 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029534 [exp] 1084 / 0 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 171 / 3e-45 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009502 [exp] 157 / 2e-40 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 156 / 3e-39 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10011697 [exp] 150 / 1e-38 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 136 / 1e-33 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 135 / 3e-33 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 122 / 2e-29 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10036644 [exp] 117 / 4e-28 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G068700 [exp] 667 / 0 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 644 / 0 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074700 [exp] 162 / 2e-42 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G007227 [exp] 156 / 3e-40 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 155 / 6e-40 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G005256 [exp] 150 / 2e-38 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 149 / 4e-38 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.001G290600 [exp] 134 / 9e-33 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.001G291033 [exp] 50 / 1e-06 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.010G019500 [exp] 49 / 7e-06 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10039617 pacid=23165249 polypeptide=Lus10039617 locus=Lus10039617.g ID=Lus10039617.BGIv1.0 annot-version=v1.0 ATGGAAGAAACTTCAGCGTTCGAGAGCAGCGAGATGATGGCCAACTTCTTAGCCTCCACGCCTCTTCTCCAAGAGTCGTGGCGGCTCTGCCACATCGCCA ACAACACCAGAAACAGCACCGGCCGCAAGGTTAGTTTTGTGACGGAGGTTTGCGGAGGAGTAGGGTACTTGGCGTTTTCGGGTGCCGTAATCCAGCCCGA GGCAGCGTCGACGGAGTACGGGAGATGCGGGAAATTGGTGGGTCTGGAAGAGTGTTGCTGGGATGGATCATCAATAAGGAATATATTCTCTCCGATTTTG GCGGGGAATCGGGGGGAGATGGCGGAAGAAGATGAAGATGAAGATGGAGAAGGAAGAAGGAAGACGAAAGAAGGGGCAAATGCGAATAATGCTATGGTTA ACGATGATTTGCTGCGTATTTTCTTGTCCATATATCACGACCCCTCCTTTCAATCCCAGATATCAGGACTAGTGCAGAAGTGCAAATCTATAGTGGTAAC AGGGCATTCAGTAGGAGGAGCGTTAGCATCTCTTTGTGCAATTTGGCTGCTTTCTTCTCTAGAATCAAACTCTCTTCTTCTTCTTCACTCATCATCTTCT ATCCTCTGCATTACTTTTGGATCTCCACTGCTAGGCAATGAGTCACTCTCTCGAGCCATTCTCACCCAAAGATGGGCTGGAAACTTCTGCCACGTGGTAT CCAGCCACGACATCATGCCAAGGCTACTCTTTGTTCCAAACCTTGCTCCTGTCGCTCCTCAGCTTCATTCCCTCCTCCACTTCTGGCACCTCTCTTCTTT ATACTCTGCTGCCTCTGAATTCCTCCCTCTCAATCTCACATATGAATCCCAGAACATACTTTACCACCATATCATCGCTTCATTGCAGCTGCTTGTGGAA TCTGGAGGAAGTAGTAGTTTGTATTGGCCATTTGGGAACTATTTCTTCTGCTCAGATGATGGAGGAGCCATATGTGTGGAGAATGCTGCCTCTGTGGTTA GAATGATGTATCTGTTGTTTCATGGGATGACTTCACTAAGTTGTAGCATTGAGAGCCATCTCAAGTATGGAGATGTTGTGGAGAAAGTTTGCTCTCAGTT TTTGACCAGTAAAAGTTTCTTACTTGGTGAGCTTCCTGAATCCAGCTATGAAGCTGGCCTTGCTTTGGCCCTGCAGTCCTCCGGGATTGACTTCCGGGGA CCTAGTGCAAGATCAGGGAAAGAGTGCCTGAAGCTTGCCAAGAGACTGGGTCGGACTCCGAGCCTGAATTGTGCGAATCTAGCAATCAAGCTGTCGCAGG TAACACCTTACAGGGCTGAAATCGAATGGTACAAGGAATCCTGCGACAGGTCTGATGATCAGATGGGGTACTATGATTCTTTCAAGCACAGAGGTGCTTC CAGGCGAGACGCCAAGATCAACATGAACCGACATAAGCTGGCCCGGTTTTGGGACAATGTGATCGAAATGCTGGAAACCAACCAGCTCCCTCATGACTTC CACAAAAGAGCTAAGTGGGTCAATGCTTCTCAGTTCTACAAGCTTCTGGTGGAGCCACTGGACATAGCTGAATACTACAGGACCGGGAAGCAGCGCGTGA AGGGCCACTACATTACATGTGGAAGGGAGAAGAGGTACCAAGTATTTGACAAGTGGTGGAAAACAGAGGGAATGGTGGTTAACCAACGAGACAACTTTGA TATGAAGAGGAGCAAGTTTGCAAGTTTGACACAGGACACACTATTCTGGGCAAGAGTGGAGGAGGCCAGAGAATGGCTCGAGATTGCCAGGAGCGAAAGG GATCCGAGGAAAGTGTCCGAGCTAATGGAGAGACTCGATGGATTTGTGAGATATGCAGGAGGTTTGGTTGAGAGGAAGGAGGTTTCCAAAGACGTTGAGG CTAAAAATTCAAGCTATTGCTTGTGGAGGAAAGACTATCAAGAGGTGAAGTCGCAAGTTGGTGCACAATTGCTCTTTCAGTTCCCTAAGTTGATGGATGG GGAGGTAGTCCCTTAA
AA sequence Show only first row Show all	>Lus10039617 pacid=23165249 polypeptide=Lus10039617 locus=Lus10039617.g ID=Lus10039617.BGIv1.0 annot-version=v1.0 MEETSAFESSEMMANFLASTPLLQESWRLCHIANNTRNSTGRKVSFVTEVCGGVGYLAFSGAVIQPEAASTEYGRCGKLVGLEECCWDGSSIRNIFSPIL AGNRGEMAEEDEDEDGEGRRKTKEGANANNAMVNDDLLRIFLSIYHDPSFQSQISGLVQKCKSIVVTGHSVGGALASLCAIWLLSSLESNSLLLLHSSSS ILCITFGSPLLGNESLSRAILTQRWAGNFCHVVSSHDIMPRLLFVPNLAPVAPQLHSLLHFWHLSSLYSAASEFLPLNLTYESQNILYHHIIASLQLLVE SGGSSSLYWPFGNYFFCSDDGGAICVENAASVVRMMYLLFHGMTSLSCSIESHLKYGDVVEKVCSQFLTSKSFLLGELPESSYEAGLALALQSSGIDFRG PSARSGKECLKLAKRLGRTPSLNCANLAIKLSQVTPYRAEIEWYKESCDRSDDQMGYYDSFKHRGASRRDAKINMNRHKLARFWDNVIEMLETNQLPHDF HKRAKWVNASQFYKLLVEPLDIAEYYRTGKQRVKGHYITCGREKRYQVFDKWWKTEGMVVNQRDNFDMKRSKFASLTQDTLFWARVEEAREWLEIARSER DPRKVSELMERLDGFVRYAGGLVERKEVSKDVEAKNSSYCLWRKDYQEVKSQVGAQLLFQFPKLMDGEVVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10039617 [exp]	0	1
					Lus10034772 [exp]	4.6	0.8759
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	6.5	0.8411
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	12.0	0.8404
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	15.2	0.8748
					Lus10033310 [exp]	17.2	0.8432
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	18.7	0.8336
AT1G19140			unknown protein		Lus10027662 [exp]	20.6	0.7906
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	21.5	0.8193
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	22.2	0.8619
AT2G46550			unknown protein		Lus10023163 [exp]	23.0	0.8259

Compare expression of checked genes

Lus10039617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.