Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63860 648 / 0 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G42140 174 / 3e-47 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G08710 165 / 3e-46 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 164 / 1e-43 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 157 / 2e-43 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 155 / 6e-43 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT4G14368 159 / 3e-42 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 158 / 9e-42 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G23270 154 / 2e-40 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G53830 145 / 1e-38 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029536 [exp] 704 / 0 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10035957 [exp] 166 / 8e-47 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 171 / 3e-46 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 171 / 4e-46 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10033543 [exp] 156 / 5e-43 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10016335 [exp] 162 / 6e-43 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 160 / 2e-42 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 157 / 2e-41 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10017581 [exp] 152 / 2e-41 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 672 / 0 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.005G071000 [exp] 159 / 4e-44 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 157 / 9e-44 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 160 / 3e-42 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G113200 [exp] 153 / 5e-42 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 154 / 2e-40 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.016G101700 [exp] 146 / 5e-39 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 149 / 2e-38 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 145 / 2e-37 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 144 / 8e-37 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10039618 pacid=23165089 polypeptide=Lus10039618 locus=Lus10039618.g ID=Lus10039618.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGGGATCCGCTCAACTTGTCTCCCCACCGGTTCATCACCACCGTGTACTCATCATCTCAGCCGGCGCCAGCCACTCCGTCGCTCTCTTCT CTGGGAATGTGGTTTGCTCTTGGGGAAGAGGTGAAGATGGGCAGTTAGGCCATGGAGATGCTGAGGATCGGCTCTCACCCACCCAGCTCAGTCGGTTGGA CGGCCACCAGATTGTTTCCCTTACTTGTGGTGCTGATCATACAACTGCCTATTCCCTATCTCCTTCCGAGGTCTACAGTTGGGGATGGGGAGACTTTGGA CGGTTGGGTCATGGTAATTCTAGTGATTTATTCACTCCCCAGCCTATCAAAGCATTGCAAGGTCTCAAGATCAGGCAAATTGCTTGCGGTGACAGCCATT GTCTAGCAGTTACAATGGACGGCGAGGTACAGAGCTGGGGGAGGAATCAAAATGGTCAACTCGGTCTTGGAACCATTGAAGACTCTCTCGTGCCCCAGAA AATTCAAGCTTTTCAGGGAATTCCAGTTAAAATGGTTGCTGCTGGTGCTGAGCATACTGCAGCTGTTACGGAAGATGGAGAGCTTTATGGATGGGGCTGG GGGCGATATGGAAACTTGGGCCTCGGTGACAGAAATGATCGCTTAGTTCCTCAGAAAGTTTCTCTCGCTCATCTGCATGGAGAGAAGATGGTCATTGTTG CTTGCGGATGGAGGCATACAATTTCTGTTTCTTCTTCTGGAGGTTTATACAGCTATGGGTGGAGCAAATATGGTCAACTAGGACATGGAGACTGCAAGGA TCATCTCACTCCCCATAAACTGGAGAGCCTAGGTGCAAGTTTTATTACTCAGATATCAGGTGGCTGGAGACATTCTATGGCTGTCACATCGGACGGAAAG TTATATGGTTGGGGATGGAATAAGTTTGGACAGGTTGGAGTTGGCGATAATGTTGACCACTGTTCTCCGGTACAATTGAAGTTCCCCCAGGATCAGAAAG TAGTTCAAATTTCTTGTGGGTGGAGGCACACACTTGCAGTTACTGATCGGCAAAACGTATTCTCTTGGGGAAGAGGGACCAATGGGCAGCTGGGTCATGG AGAGTCGATTGACAGGAATTTACCGAAAATAGTAGAAGCTCTAAGTGCTGATGGATCTGGTGGTCAACAGTTGCCATCATCTCTAGTTGATCCATCATCA GGGAAAATATGGGTGTCACCGTCAGCTAGATATGCTGTTGTTCCTGGGGAAGCAGGAGCCGGCTCGGCAGGTGGTAATGGGAACGAAGTAAGCGTTCCAG AGAACGATGTGAAAAGGTTGCGTGTCTAA
AA sequence Show only first row Show all	>Lus10039618 pacid=23165089 polypeptide=Lus10039618 locus=Lus10039618.g ID=Lus10039618.BGIv1.0 annot-version=v1.0 MEEEGSAQLVSPPVHHHRVLIISAGASHSVALFSGNVVCSWGRGEDGQLGHGDAEDRLSPTQLSRLDGHQIVSLTCGADHTTAYSLSPSEVYSWGWGDFG RLGHGNSSDLFTPQPIKALQGLKIRQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTIEDSLVPQKIQAFQGIPVKMVAAGAEHTAAVTEDGELYGWGW GRYGNLGLGDRNDRLVPQKVSLAHLHGEKMVIVACGWRHTISVSSSGGLYSYGWSKYGQLGHGDCKDHLTPHKLESLGASFITQISGGWRHSMAVTSDGK LYGWGWNKFGQVGVGDNVDHCSPVQLKFPQDQKVVQISCGWRHTLAVTDRQNVFSWGRGTNGQLGHGESIDRNLPKIVEALSADGSGGQQLPSSLVDPSS GKIWVSPSARYAVVPGEAGAGSAGGNGNEVSVPENDVKRLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	0	1
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	1.0	0.9044
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	5.1	0.8156
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	5.2	0.8121
AT1G75060			unknown protein		Lus10018805 [exp]	6.5	0.7978
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	6.6	0.8067
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	9.0	0.7966
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	15.9	0.7696
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	16.1	0.8005
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	17.2	0.7787
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	18.0	0.8050

Compare expression of checked genes

Lus10039618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.