Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23550 256 / 3e-88 Got1/Sft2-like vescicle transport protein family (.1) AT5G24170 167 / 2e-53 Got1/Sft2-like vescicle transport protein family (.1) AT4G26550 54 / 5e-09 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 50 / 1e-07 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029537 [exp] 307 / 2e-108 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10019023 [exp] 172 / 3e-55 AT5G24170 204 / 3e-68 Got1/Sft2-like vescicle transport protein family (.1) Lus10000361 [exp] 142 / 1e-43 AT5G24170 200 / 1e-66 Got1/Sft2-like vescicle transport protein family (.1) Lus10027128 [exp] 47 / 2e-06 AT4G26550 333 / 3e-117 Got1/Sft2-like vescicle transport protein family (.1) Lus10032895 [exp] 47 / 2e-06 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135000 [exp] 266 / 4e-92 AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1) Potri.012G012700 [exp] 173 / 1e-55 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 161 / 3e-51 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.014G170700 [exp] 53 / 1e-08 AT4G26550 310 / 3e-108 Got1/Sft2-like vescicle transport protein family (.1) Potri.011G164900 [exp] 47 / 2e-06 AT5G56020 325 / 5e-114 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10039619 pacid=23165037 polypeptide=Lus10039619 locus=Lus10039619.g ID=Lus10039619.BGIv1.0 annot-version=v1.0 ATGGACAAGATGAACCAGGCCTTGGAGAAGATGAAGATGCTCGTCGGGATGGAAGTCGACGAAGACGACGAAGAACAGCCCTCTGCCTCGTCTCCCGAAT CTTCCTCTTTCATCGACGACTTCAATCGCAACTGCACCCTCTCCTCTCAGCAGAGGCTTTACGGTTTTGCCATCTGCTTCGTCTCGGGCATAGCTTGTAC ATTTTTGTCTATGCTGGTCTTTCTACATCCAGTTAAGTTTGGAGTTACTTTCACCTTTGGCAATATGCTTGCACTTGGAAGTACAGCGTTCCTGATAGGT CCAAAACGCCAAGTCACTATGATGCTTGATCCTGTTCGCATATACGCCACAGCTTTGTATCTTGCAAGCATTATTATTGCCTTGTTTTGTGCTGTCTATG TTCACAGCAAGATCTTGACACTCTTCGCCGTCATTTTAGAGTTTGGAGCACTATTTTGGTACAGCTTGAGCTATATTCCATTTGCTCGGTCGATGGTGTC AAAGATTATGGTCAGTTGCTTTGACACTGAATTTTAA
AA sequence Show only first row Show all	>Lus10039619 pacid=23165037 polypeptide=Lus10039619 locus=Lus10039619.g ID=Lus10039619.BGIv1.0 annot-version=v1.0 MDKMNQALEKMKMLVGMEVDEDDEEQPSASSPESSSFIDDFNRNCTLSSQQRLYGFAICFVSGIACTFLSMLVFLHPVKFGVTFTFGNMLALGSTAFLIG PKRQVTMMLDPVRIYATALYLASIIIALFCAVYVHSKILTLFAVILEFGALFWYSLSYIPFARSMVSKIMVSCFDTEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	0	1
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	2.4	0.8438
AT4G21215			unknown protein		Lus10007639 [exp]	4.2	0.8295
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	6.0	0.8530
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	6.9	0.8593
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10007963 [exp]	7.5	0.8163
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	7.7	0.8595
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	10.3	0.7873
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	13.0	0.8107
AT5G13500			unknown protein		Lus10036037 [exp]	14.3	0.8628
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	16.1	0.8067

Compare expression of checked genes

Lus10039619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.