Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 179 / 3e-57 Protein of unknown function, DUF538 (.1) AT3G07460 166 / 2e-52 Protein of unknown function, DUF538 (.1.2) AT5G16380 140 / 6e-42 Protein of unknown function, DUF538 (.1) AT5G54530 115 / 2e-32 Protein of unknown function, DUF538 (.1) AT1G61667 114 / 2e-32 Protein of unknown function, DUF538 (.1) AT5G19860 99 / 5e-26 Protein of unknown function, DUF538 (.1) AT1G55265 87 / 3e-21 Protein of unknown function, DUF538 (.1) AT4G02360 69 / 7e-15 Protein of unknown function, DUF538 (.1) AT1G02816 64 / 1e-12 Protein of unknown function, DUF538 (.1) AT4G02370 62 / 6e-12 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029538 [exp] 273 / 4e-94 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 206 / 2e-67 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 186 / 2e-60 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 187 / 8e-60 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 176 / 8e-56 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10020218 [exp] 142 / 1e-42 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 142 / 4e-42 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 110 / 1e-30 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 107 / 3e-29 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 207 / 3e-68 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 206 / 1e-67 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 117 / 4e-33 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 115 / 1e-32 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 108 / 5e-30 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 103 / 7e-28 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 102 / 2e-27 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 97 / 3e-25 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 84 / 2e-20 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 81 / 3e-19 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10039620 pacid=23165349 polypeptide=Lus10039620 locus=Lus10039620.g ID=Lus10039620.BGIv1.0 annot-version=v1.0 ATGATGATGCTGCACCGGATGCTACCTGTATCATACGTTTGGCTCTCGTTTCTTCTCCTCCTGCTCTGTTTTATTGATGCCAAACAGCAGGTGGAGGAGA AGGTAGGAGGAGGAGGCGGAGAGTCGATTTACGACATCCTCAAGGCGCGGGCTCTGCCGATGGGGCTCCTCCCCAAAGGCATTAAGGATTTCAGGTTCGA TGACTCGGGGTATTTCGAGGCCTATTTGGACCAGGCTTGCAATGCCAAGTTCGAGAGCGAGTTGCATTACGATAGGAATGTATCAGGGACTATCAGCTAT GGTCAGATCGGGAGCCTCTCGGGAATTTCTGCGCAGGATTTGTTCCTCTGGTTCCCTGTCAAGGGAATTCGCGTCGACGTTCCCAGCTCCGGCCTTATCT ATTTTGATGTTGGTGTCGTTCTCAAGCAGTTCTCGCTTTCCTTGTTCGAGACCCCCAGGGATTGTGCTGTTGCCACCGATGATTTCCTCAAGTTGCAGCT TCAACTTCCAGCAACTGCTGTGAGCTGTGATACCACCAGAAATGACAGCTGGAGGAATATTAGAAGCACTTCTTTGGAGATCTTCTTGTGTAGTGAATCT GTGGGTATCCAAATGGGGGCTTCTGTCATAGAGTAA
AA sequence Show only first row Show all	>Lus10039620 pacid=23165349 polypeptide=Lus10039620 locus=Lus10039620.g ID=Lus10039620.BGIv1.0 annot-version=v1.0 MMMLHRMLPVSYVWLSFLLLLLCFIDAKQQVEEKVGGGGGESIYDILKARALPMGLLPKGIKDFRFDDSGYFEAYLDQACNAKFESELHYDRNVSGTISY GQIGSLSGISAQDLFLWFPVKGIRVDVPSSGLIYFDVGVVLKQFSLSLFETPRDCAVATDDFLKLQLQLPATAVSCDTTRNDSWRNIRSTSLEIFLCSES VGIQMGASVIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	0	1
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	1.0	0.8852
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	4.0	0.8368
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	6.5	0.8278
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	6.8	0.8470
					Lus10042355 [exp]	8.1	0.8385
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	10.2	0.8342
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	10.8	0.8159
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	11.0	0.8129
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	14.0	0.7393
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	14.9	0.7569

Compare expression of checked genes

Lus10039620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.