Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 96 / 8e-26 ATCXE18 carboxyesterase 18 (.1) AT5G27320 42 / 5e-06 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 39 / 5e-05 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 37 / 0.0004 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029542 [exp] 135 / 1e-43 AT5G23530 99 / 1e-26 carboxyesterase 18 (.1) Lus10013771 [exp] 81 / 5e-22 AT5G23530 96 / 4e-25 carboxyesterase 18 (.1) Lus10039162 [exp] 85 / 2e-21 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 70 / 8e-16 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10000928 [exp] 39 / 9e-05 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 39 / 9e-05 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10008189 [exp] 37 / 0.0003 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 37 / 0.0003 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092500 [exp] 106 / 1e-29 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.019G014306 [exp] 80 / 4e-20 AT5G23530 0 / 1 carboxyesterase 18 (.1) Potri.019G014302 [exp] 79 / 3e-19 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 76 / 3e-18 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.006G198800 [exp] 39 / 6e-05 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G028700 [exp] 39 / 7e-05 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 38 / 0.0001 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 36 / 0.0005 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10039621 pacid=23165034 polypeptide=Lus10039621 locus=Lus10039621.g ID=Lus10039621.BGIv1.0 annot-version=v1.0 ATGGTGATCGTGGGTGGATTGGACCCGCTACAGGACTGGCAGAGGAAGTATTACAAATGGCTCAGGAGAATGGAGAAAGAGGCGACGCTGATCGAGTACC CGAATATGATCCATGCATTTTACATGTTCCCTGAATTGCCGGAATCGGCCGAGGTTTTCGCTCAGGTGAAGGATTTCGTTGCCAGGAAGTCGGCCGCCTG A
AA sequence Show only first row Show all	>Lus10039621 pacid=23165034 polypeptide=Lus10039621 locus=Lus10039621.g ID=Lus10039621.BGIv1.0 annot-version=v1.0 MVIVGGLDPLQDWQRKYYKWLRRMEKEATLIEYPNMIHAFYMFPELPESAEVFAQVKDFVARKSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	1.0	0.9149
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	1.4	0.9147
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	1.7	0.9122
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	3.2	0.8657
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	5.3	0.8688
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	6.0	0.8550
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	7.2	0.8524
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	8.8	0.8647
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	9.4	0.8584
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10042418 [exp]	9.5	0.8481

Compare expression of checked genes

Lus10039621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.