Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35670 772 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 765 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT4G09570 765 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT3G10660 705 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 702 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 689 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT2G17290 678 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 677 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT4G35310 674 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT5G12180 614 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029547 [exp] 964 / 0 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10009427 [exp] 746 / 0 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10017911 [exp] 746 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10014820 [exp] 733 / 0 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10008958 [exp] 705 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 704 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10022986 [exp] 694 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10021248 [exp] 693 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10001384 [exp] 692 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T012800 [exp] 840 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.013G112500 [exp] 775 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 762 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.010G244800 [exp] 704 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 702 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 696 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 693 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.016G066700 [exp] 689 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 687 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 674 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10039623 pacid=23165238 polypeptide=Lus10039623 locus=Lus10039623.g ID=Lus10039623.BGIv1.0 annot-version=v1.0 ATGGAGAATCCACCCACTACCTCCTCCACTCCTCCTCCTCCTCCATCTTCTTCCAAAACCAAATGGGTTCTCCCTTACCGCACCGAGAACGTCAAGCAAG AGTACACCCTGGGCAAGAAGCTTGGTCAAGGCCAGTTTGGAACCACTTACCTCTGTACCCACAAGTCAACTGGGCACCGCTACGCCTGCAAATCCATCCC CAAGCGCAAGCTCTTCTGCAAAGAGGACTACGAGGACGTCTGGAGGGAAATCCAGATAATGCACCATCTCTCCGAGCACCCCAATGTCGTCAGGATCAGG GGTGCCTACGAGGACCCTCTCTCTGTCCATCTTGTTATGGAGCTCTGTGAAGGTGGGGAGCTCTTCGATAGGATTGTCAAGAAGGGACATTTCAGCGAGA AGGAAGCTGCTAAGCTCATCAAGGTCATCGTTGGCGTCGTCGAGTCTTGCCATTCTTTAGGGGTTATGCATAGGGATCTTAAGCCTGAGAACTTCTTGTT CGATACCGATTCTGAGGATGCTGCTCTCAAGGCCACTGATTTTGGCCTCTCTGTCTTTTACCAGCCAGGAGAAATATTTTCTGATGTTGTTGGTAGTCCG TACTATGTTGCACCTGAGGTTTTGCGCAAATACTATGGACCAGAATCTGATGTATGGAGTGCAGGAATCATTTTATACATCTTACTAAGTGGGGTGCCAC CCTTCTGGGCAGAAACTGAAGTAGGAATCTTCCGGCAGATACTACAAGCGAAATTGGATTTTGTATCTGAACCATGGCCTAGTATTTCAGACAGTGCAAA GGACCTACTCACTAAGATGCTTGAGCGGAACCCTAGGAAGAGACTAACTGCTCATGGAGTACTCTGCCATCCTTGGATTCTGGATGACACAATGGCCCCA GATAAGCCTCTTGATTCTGCTGTTTTATCACGATTGAAGCAATTCTCTGCAATGAACAAGCTTAAGAAGATGGCCCTTCGTGTGATTGCGGAGAGGCTAT CAGAAGAAGAGATTGGGGGGCTAAAGGAGCTGTTCAAAATGATAGACACAGACAACAGTGGAACAATAACTTTTGAGGAACTAAAGGATGGACTGAAGAG AGTAGGATCAGAACTAATGGAATCTGAAATAATGGATTTGATGAATGCAGCTGATGTTGACAATAGCGGATCGATTGATTATGGAGAGTTTCTAGCTGCA ACAGTGCACTTGAATAAATTGGAAAGAGAAGAAAACTTAGTATCAGCTTTCTCCTTCTTCGACAAAGATGGTAGCGGGTACATAACCATTGACGAGCTGC AGCAAGCGTGCAAGGAGTTTGGGCTGAGTGAGCTTCATCTTGATGATATGATTAAAGAGATTGATCAAGATAATGATGGACAGATAGACTATGGAGAATT TGCAGCAATGATGAGGATGGGTAATGGAGGAGGAGGAGGAGTTGGGAGGAGGACTATGAGGAGAAGTTTTAACTTGGGAGATGCTTTGGGAGTTGGGGTC CCAGCATCAAATGGAGCAGCTAAGCCTAGTGAATTAGATTAA
AA sequence Show only first row Show all	>Lus10039623 pacid=23165238 polypeptide=Lus10039623 locus=Lus10039623.g ID=Lus10039623.BGIv1.0 annot-version=v1.0 MENPPTTSSTPPPPPSSSKTKWVLPYRTENVKQEYTLGKKLGQGQFGTTYLCTHKSTGHRYACKSIPKRKLFCKEDYEDVWREIQIMHHLSEHPNVVRIR GAYEDPLSVHLVMELCEGGELFDRIVKKGHFSEKEAAKLIKVIVGVVESCHSLGVMHRDLKPENFLFDTDSEDAALKATDFGLSVFYQPGEIFSDVVGSP YYVAPEVLRKYYGPESDVWSAGIILYILLSGVPPFWAETEVGIFRQILQAKLDFVSEPWPSISDSAKDLLTKMLERNPRKRLTAHGVLCHPWILDDTMAP DKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKRVGSELMESEIMDLMNAADVDNSGSIDYGEFLAA TVHLNKLEREENLVSAFSFFDKDGSGYITIDELQQACKEFGLSELHLDDMIKEIDQDNDGQIDYGEFAAMMRMGNGGGGGVGRRTMRRSFNLGDALGVGV PASNGAAKPSELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10039623 [exp]	0	1
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Lus10026271 [exp]	2.4	0.7652
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10019126 [exp]	21.8	0.7404
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	29.6	0.7358
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	35.1	0.7187
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	52.9	0.6896
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	94.6	0.6694
AT3G08880			unknown protein		Lus10022668 [exp]	102.3	0.6617
AT1G28100			unknown protein		Lus10001800 [exp]	145.6	0.6361
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	188.0	0.6087
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	194.4	0.6159

Compare expression of checked genes

Lus10039623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.