Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41620 1214 / 0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1) AT3G57350 1155 / 0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029548 [exp] 1595 / 0 AT2G41620 1301 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026200 [exp] 1290 / 0 AT2G41620 1207 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1) Potri.012G034800 [exp] 1288 / 0 AT2G41620 1268 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04097 [flax] [poplar] Nic96 Nup93/Nic96
Representative CDS sequence Show only first row Show all	>Lus10039624 pacid=23165333 polypeptide=Lus10039624 locus=Lus10039624.g ID=Lus10039624.BGIv1.0 annot-version=v1.0 ATGGCACGCGACCAAGACATGGGCGGTTGGAGCGATTTGCTTCATTCCTCCACCAGACTTCTCGAGCAGGCAGCTCCCTCTGCTCAGTTCCCTCCTCTTC AGAGGAATTTGGACCAGTTGGAAGCATTGTCCAAGAAGCTCAAGGCTAAAACCGTTAGAAACGAAGCCCCTTCACAATCAATTGCTGCTACAAGGCTACT CGCACGCGAAGGAATAAATGCTGAACAACTTGCACGGGATTTGAAGTCTTTTGAGTTGAAGACAACATTTGAGGATGTGTTCCCTGCTGAAGCTACAAGT GTTGAAGAGTATTTGCAGCAGGTTCATGAAATGGCTATGGTGTCATCAATCCAAGAAGCGCAAAAGGATAACTTGAGGAGTTTCAATGATTATATGATGA AGGTGTTGGAGGATGATTGGCAAAAGGAAAAACGTGATTTTCTCCATAGCTTGAATCGGCTTTCTACACTACCAAGGACTAATTTTGTTGACACAAGCAT ATCTGGTTCTCGTCGAGGGCAACTTGTGCCTGTTGTTTCAAGTAGCCAATTAGTCTCTTCTGGCCCAGCTGCCATGGAGATTGTACCTTTTGCTAACAAA CCAATTCTGGAAAGAAAAGCTTTGGCATATTCTGAAGTTGTGAAGGATCTGAACCATGCAAGAGAACGTGGCTTACCATTTAAAACAGCAACTTCCTTCA AGGGTGCTTATGATAGTCTACGATTAGAAGGATCTGGTGGGAAATCTGTTAACATGCAGAAGATATGGCACCTTGTTCAGATTTTCTCAACAAAAATGGT ACTAGTTATTGGTGCTAGACATCATCTTGAATGGGGACATGAAAAATATATGATGGATACGATCCAGAGTCATCCTGCACAGGCTTCTCTTGGAGGAGCT GTTGGAAATATGCAGAAAGTCCGGGCATTTCTTCGGATTCGTTTAAGGGATTATGGACTCTTAGATTTTGATTCAGACGATAGCCACAGACAGCCTCCAG TTGATACCACTTGGCAGCAGATCTATTATTGTTTGAGGACCGGATATTATGATGAAGCCAGAAACGTTGCCCTATCTTCCCGTTCATCTCACCAATTTGC ACCTCTGCTTACAGAGTGGATTAACACTGGTGGAATGGTGCCTGCGAGTATTGCTGCTGCTGCTTCAGAAGAATGTGAAAAGATGCTAAGAATGGGTGAC CGATCAGGTCGAGCTGCTTATGATAAGAAGAAGCTGTTGCTTTATGCTATGGTATCTGGTTCACGCAGGCACATTGATCGCTTGCTTAGAGACCTGCCCA CACTCTTTGGTACTATTGAAGATTTCTTGTGGTTCACATTATCTGCTGTACGTGATATACGTGGGGGGACTTCATCAATGGTTTTGCATGAAAGCTCCAT GCCATATACTTTGGAAGATTTGCAGGCTTACCTGAACAAATTTGAGCCATCTTATTATACGAAGAATGGGAAGGATCTTCTAGTGTACCCTTATGTGTTG CTTCTGAGCATCCAGTTGCTACCAGCTGTCTTATATTTGTATAAGGAATCTGTTGGTGAAGGATATGATATTGATGCTGTTCATATCTCGGTTGTGCTGG CTGATCATGGCCTTCTTTCCGAAGGTTCTAGTACTGGACGGAATCTTGGACTGATGGATGCTTATGCGGAGGCCGGTAGCATAATCAGACAGCATGGATC TGCACATTTGCGTAACGGGAACCTTCCATTGGCATTGGAGTATTATGCACAAGCTGCTGCCTCAGTGGGTGGTGGAGCAATTTCATGGACAGCTGGAGGC ACCGTGGATCAGCAGAGGCAGAGAAACTTGATGCTTAACCAGCTACTCACGGAGCTATTACTGCGAGATGGGGGAATTATTTTCTTGCTTGGCTCAAGGG GCGCTGGAGAAGAAGGTCAACTGGGACGATTTTTAATTGATGATAAATCGAGACAACAATTTCTGCTCGAAGCTGCTTGCCAATGTGTTGAAGCTGGCCT CCATGAAAAATCGATAGATATTCACAAGAGAGTTGGCGCATTTGCTATGGCTCTTGACACAATCAACAAGTGTCTGTCTGAGGGAATCTGTGCCCAGTCT CGTGGTAGATCGGATGGAGAGAGCAGGACCAGTGGTCTTATTCAGTGTGGGAACGAAATTTTGGAAGCTTACAAGTATTACCCTGAAATCAGTCCTAAGG ACACGGAGCATGTTATGGAACATGAGACAGTTTTGAGACAGCTCGAGGCAATATTGTCTATCCACCAGTTGATGAGACTGGGGAATTACCTGGAAGCTTT AAGAGGGATTGCCAAAATTCCGTTCCTCCCGTTAGATCCACGGGCATCAGATGTGAACCCTAGAGAATTCCAGAATTTGTCTCCCCATGTCAAAACCTGC GTTCCTGACGTTTTGAAGGTGGCTCTGACATGTCTAGACAACGTTACAGACACGGACGGGTCACTCCGCGCCATGAGGGCCAAGATTGCGCAGTTCCTGG CGAACAACACAAACAGGAACTGGCCACGTGAGCTGTACGAGAAGGCTGCACGGAGCTTGTGA
AA sequence Show only first row Show all	>Lus10039624 pacid=23165333 polypeptide=Lus10039624 locus=Lus10039624.g ID=Lus10039624.BGIv1.0 annot-version=v1.0 MARDQDMGGWSDLLHSSTRLLEQAAPSAQFPPLQRNLDQLEALSKKLKAKTVRNEAPSQSIAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATS VEEYLQQVHEMAMVSSIQEAQKDNLRSFNDYMMKVLEDDWQKEKRDFLHSLNRLSTLPRTNFVDTSISGSRRGQLVPVVSSSQLVSSGPAAMEIVPFANK PILERKALAYSEVVKDLNHARERGLPFKTATSFKGAYDSLRLEGSGGKSVNMQKIWHLVQIFSTKMVLVIGARHHLEWGHEKYMMDTIQSHPAQASLGGA VGNMQKVRAFLRIRLRDYGLLDFDSDDSHRQPPVDTTWQQIYYCLRTGYYDEARNVALSSRSSHQFAPLLTEWINTGGMVPASIAAAASEECEKMLRMGD RSGRAAYDKKKLLLYAMVSGSRRHIDRLLRDLPTLFGTIEDFLWFTLSAVRDIRGGTSSMVLHESSMPYTLEDLQAYLNKFEPSYYTKNGKDLLVYPYVL LLSIQLLPAVLYLYKESVGEGYDIDAVHISVVLADHGLLSEGSSTGRNLGLMDAYAEAGSIIRQHGSAHLRNGNLPLALEYYAQAAASVGGGAISWTAGG TVDQQRQRNLMLNQLLTELLLRDGGIIFLLGSRGAGEEGQLGRFLIDDKSRQQFLLEAACQCVEAGLHEKSIDIHKRVGAFAMALDTINKCLSEGICAQS RGRSDGESRTSGLIQCGNEILEAYKYYPEISPKDTEHVMEHETVLRQLEAILSIHQLMRLGNYLEALRGIAKIPFLPLDPRASDVNPREFQNLSPHVKTC VPDVLKVALTCLDNVTDTDGSLRAMRAKIAQFLANNTNRNWPRELYEKAARSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	0	1
AT3G55160			unknown protein		Lus10007252 [exp]	1.0	0.9648
AT4G28200			unknown protein		Lus10003351 [exp]	1.4	0.9472
AT4G28200			unknown protein		Lus10004616 [exp]	1.7	0.9468
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	2.8	0.9455
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	2.8	0.9418
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	5.0	0.9249
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	8.1	0.9392
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	8.1	0.9436
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	8.7	0.9445
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	8.7	0.9348

Compare expression of checked genes

Lus10039624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.