Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63620 629 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT1G64710 135 / 1e-35 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 130 / 3e-34 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 127 / 8e-33 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 125 / 5e-32 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G32780 125 / 7e-32 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G22430 119 / 4e-30 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 119 / 6e-30 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT4G22110 117 / 4e-29 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 108 / 4e-26 Zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029549 [exp] 788 / 0 AT5G63620 653 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029759 [exp] 120 / 2e-30 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 119 / 8e-30 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 119 / 1e-29 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 116 / 8e-29 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004786 [exp] 114 / 5e-28 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 108 / 8e-26 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Lus10031890 [exp] 106 / 2e-25 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10029757 [exp] 106 / 2e-25 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138700 [exp] 671 / 0 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.T010600 [exp] 663 / 0 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 139 / 2e-37 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108701 [exp] 135 / 8e-36 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.019G041600 [exp] 135 / 1e-35 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 135 / 2e-35 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.002G072100 [exp] 133 / 4e-35 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 131 / 2e-34 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G254900 [exp] 131 / 3e-34 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152800 [exp] 130 / 1e-33 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10039625 pacid=23165011 polypeptide=Lus10039625 locus=Lus10039625.g ID=Lus10039625.BGIv1.0 annot-version=v1.0 ATGGTCGATGCTTCCAAATACATATCTTCGAAATCCAACCCACGCTTCCTCACCACCGCCGCACCCTCCGACGCCTCTTATCACATTAGCTCTGGCGGCT TCATGCGAGGAGCCGTCTTTTGGGATTCTTCCAGACCGATTTCCATCGAAGAATTCCATATCCCTCGCCCCAAAGCTGGAGAACTTCTCATCAAGACCAA AGGTTGTGGAGTTTGTCACTCTGATCTCCATGTTATAAAGGGCGAGCTCTCATTTCCTAGCCCTTGTGCTATTGGCCACGAAATCACCGGCGAAGTCGTC GAGCATGGTCCCATGACTGACTCCAAGATTATCCATAGGCTTCCTGTTGGATCTAATGTCATTGGAGCTTTCATAATGCCATGTGGTAACTGCTTCTACT GCTCAAAGGGCCACGATGATTTATGTGAGGACTTCTTTGCTTATAACCGGGCTAAAGGAACTCTCTATGATGGCGAAACTCGTCTTTTCCTCCGGGGCAG TGGTAAGCCGATATTCATGTACAGCATGGGAGGCCTTGCTGAGTACTGCGTTGTCCCTGCAAATGCATTAACGACTTTACCAGATACATTGCCATTTACC GAGTCTGCAATCTTAGGGTGTGCTGTGTTTACTGCATACGGTGCGATGGCACATGCTGCTGAGGTGCGTCCAGGAGATTCAGTTGCTGTAATTGGAGTTG GGGGTGTTGGCTCAAGTTGTTTGCAGATAGCAAGGGCATTTGGGGCCTCTGATATCATTGCCGTTGATGTTCAGGATGATAAATTAGAGAAGGCTAAGAT TTTTGGGGCTACACATACTGTAAATGCAGTAAAGGAGGATCCGGTTGAAAAGATCAGGGAAATAACTGGAGGACGAGGGGTGGACGTTGCAGTGGAAGCC TTGGGCAAACCACTCACATTTTCTCAGTGCACCAGAAGTGTAAGAGATGGTGGGAAAGCTGTGATGATTGGACTTGCAAAAGCTGGTTCAGTTGGGGAGA TGGACATTAATCATTTAGTTCGTCGAAAGATCCAAGTGATTGGTTCGTATGGAGGAAGGGCGAGGCAAGATCTTCCAAAGCTGGTAAGACTTGCAGAAAC AGGTATTTTCAACCTCAAAGACGCCGTATCCAGGAAGTATAAGTTTGAGGAGGCAGGGGCAGCATTTCAGGATCTCAACGAGGGGAAGATTATTAGCCGA GCTGTTGTTGAGATAATGTAG
AA sequence Show only first row Show all	>Lus10039625 pacid=23165011 polypeptide=Lus10039625 locus=Lus10039625.g ID=Lus10039625.BGIv1.0 annot-version=v1.0 MVDASKYISSKSNPRFLTTAAPSDASYHISSGGFMRGAVFWDSSRPISIEEFHIPRPKAGELLIKTKGCGVCHSDLHVIKGELSFPSPCAIGHEITGEVV EHGPMTDSKIIHRLPVGSNVIGAFIMPCGNCFYCSKGHDDLCEDFFAYNRAKGTLYDGETRLFLRGSGKPIFMYSMGGLAEYCVVPANALTTLPDTLPFT ESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGVGGVGSSCLQIARAFGASDIIAVDVQDDKLEKAKIFGATHTVNAVKEDPVEKIREITGGRGVDVAVEA LGKPLTFSQCTRSVRDGGKAVMIGLAKAGSVGEMDINHLVRRKIQVIGSYGGRARQDLPKLVRLAETGIFNLKDAVSRKYKFEEAGAAFQDLNEGKIISR AVVEIM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63620			GroES-like zinc-binding alcoho...		Lus10039625 [exp]	0	1
AT5G63620			GroES-like zinc-binding alcoho...		Lus10029549 [exp]	1.0	0.9061
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	4.2	0.8632
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	11.8	0.8652
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	15.6	0.8466
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10023430 [exp]	16.6	0.8664
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	20.0	0.8483
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020305 [exp]	22.4	0.8650
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	23.2	0.8728
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	24.3	0.8613
AT3G19990			unknown protein		Lus10017359 [exp]	27.0	0.8259

Compare expression of checked genes

Lus10039625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.