Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08630 574 / 0 DDT domain-containing protein (.1) AT4G12750 50 / 6e-06 Homeodomain-like transcriptional regulator (.1) AT5G44180 45 / 0.0001 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 45 / 0.0003 HD HB-1 homeobox-1 (.1) AT5G22760 44 / 0.0003 PHD finger family protein (.1) AT5G12400 44 / 0.0005 DNA binding;zinc ion binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004282 [exp] 781 / 0 AT5G08630 645 / 0.0 DDT domain-containing protein (.1) Lus10029550 [exp] 587 / 0 AT5G08630 415 / 2e-136 DDT domain-containing protein (.1) Lus10015325 [exp] 53 / 1e-06 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10014918 [exp] 52 / 2e-06 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10027346 [exp] 52 / 2e-06 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10012302 [exp] 49 / 2e-05 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10009383 [exp] 48 / 4e-05 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10025454 [exp] 48 / 4e-05 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10016078 [exp] 47 / 5e-05 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008541 [exp] 717 / 0 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 697 / 0 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.017G016200 [exp] 58 / 2e-08 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 52 / 2e-06 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.007G135500 [exp] 52 / 2e-06 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 52 / 2e-06 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 51 / 3e-06 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.001G254300 [exp] 50 / 5e-06 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.009G049100 [exp] 49 / 2e-05 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10537 [flax] [poplar] WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and remodelling N-terminal PF02791 [flax] [poplar] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Lus10039626 pacid=23165111 polypeptide=Lus10039626 locus=Lus10039626.g ID=Lus10039626.BGIv1.0 annot-version=v1.0 ATGCCTTTGCTGAAAAAAACGCCATTTCCTTTGGCGGAGCCTCCTCGAGATTTAGAGCCAGAAGACCTAGTATACCAAAGAACGTGGTCATGTAAAATTA GTGGAAAAGCTTTCTTGACGTATGAAGAAGCCCTAGTTTCTGAGAAGCATGCCACAGAAAAGGTTCAAGGGATACCTGAAGTGCTTGTGGAGCCTGCACT GCGTGTCATACAATTTAGTACACTTTCTCTCAAAGATCTCGCAGACACAATAGGCGTCAAATTGCACGAATACAAGTTTGTAGGGGATGAATTGCACGCA AAACAGGGAGGGAATGTCTTCCCTTGCAAGATACTAAAAGTTCTGGAAGACAGTAATGGTAAAACTCGTTACGAGATAATATGGCTAGACAAAAATAAGA AGGCTAGGGACACTTTAGTGGTAACTGAGGATGAGCTGATAAGGAAAAAGAAACCATGTAGTAGAGAGGTTTTGAAGTCTTTTATTCGGGAATCCACATA CCGCAGAGATCCTTGGGTGCTTCATGAGCAGTTGGCTAGGAAATATGGCATCTCAAATGATCCACCAGAGGAGTTAAAAGACAGAGTGTTTGTCCATAAT GGAGTAGTCTGTGATAAGAAGAGGAAAAGGGCTGGGGAAGGAGAAAAAGGAGGAAAGTGTAAAAAGGGGAAAGGCGCAGATGAAAGCAACAGCAGAAGCG AACATAAACAGGATGAGCCTATCAACTATCCAATTGATGATCTTTTAGTGCAACCAGCTGTAGATGATCAAGCCTTAATCGAACGCCCTTTACCTTCAAG GGATTTTGATGTCCCTATGGATTCCGTTGGAGATCTTTTAATGGTCTGGGACTACTGCTCCTCTTTTGGCAGACTGTTGCATTTGTCGCCATTTTCTCTG GAAGACTTTGAAAATGCCATCTGCCGGAAGGACAATAATATAATACTAATTGTTGAGACACATTCGGCTCTTCTAAATTTACTTCTAAAGGAAAATGGCG ACTACTTTTTGGCCTCAAGAAAGAAGAATAGAAAGCTGAAGATAACATTGGTTACCTGGACAGAATATCTTTGCGATTTCATAGAAATGGTTGGAATTCC TGGTTTATCAGCATCAACATCAACTATTAAACGAGGACATTATGGCCTCTTAGATGTTCAAGTCAAACTAGGAATCTTACGGGAATTGGTCAATGAAGTG GTAGAAACAGCTCTTTTCAGAAAGAAAATAGATGAATATGTTGAACAGAGACATGTGCTTGGAGCCACATTCAGAGTGGAGGCACTTGAAGAAGCTAGAA GAAAAAGAGAAGAGAAAGAACGATTGAAGACTGAAGATGTTGCTAATGGATTAAGTAATGGACATTTTCCAGCTGAGGCTGAGGATATACGATGCAATCA GGATGCCTCTGTCAATAAGAACAATGATAAAAACGGTGAGGTACTGAGAAAACATAAGCGAGGGACGATCTCTTCTGAAGAAGACAGTAATGCATCAGAC AGAAGTGACGACAGCCATTCTGAGACTGCATCAAAGAAAATGGGTACGAGGCAGAACAAGGAAATTCTTACAGGGACAGGCGAAGATGCGGCAAAACAAA TGAAGGATGAAAAGAAAGGGCCTGCAGAAATGAAGACCAAAGACCAAAGGAAAGAACAGTTTGATCGGGAGATGGAGAAGCGAGTGATACGCACTGAACC ATTGGGTAAAGACAGACACTATAACAGATATTGGTGGCTCCGGCATGATGGAAGGATGTTTGTTGAGAGTTCTGATTGCAAAGAGTGGGGCTATTATAGC AACAAAGAAGAGCTCAATGCATTGATGGGTTCACTGAACCCTAAGGGTGAGAGAGAGAAGGCTCTTCAGAAGGAGCTGGAGAAATTGTACAGCAGAATTT GTGCGGAACTGCAAAAGAGGTCTAACGAATTGGCTGATGAAATTGCAATGGAGGAAACAGTGGTTAGGAGATCTACGCGTGTACGGGCTATACCGAGAGA AAACTCAGCAAACTCGTGCCTTAGATATGTTAATAAGTGGAAGGTAGACTAG
AA sequence Show only first row Show all	>Lus10039626 pacid=23165111 polypeptide=Lus10039626 locus=Lus10039626.g ID=Lus10039626.BGIv1.0 annot-version=v1.0 MPLLKKTPFPLAEPPRDLEPEDLVYQRTWSCKISGKAFLTYEEALVSEKHATEKVQGIPEVLVEPALRVIQFSTLSLKDLADTIGVKLHEYKFVGDELHA KQGGNVFPCKILKVLEDSNGKTRYEIIWLDKNKKARDTLVVTEDELIRKKKPCSREVLKSFIRESTYRRDPWVLHEQLARKYGISNDPPEELKDRVFVHN GVVCDKKRKRAGEGEKGGKCKKGKGADESNSRSEHKQDEPINYPIDDLLVQPAVDDQALIERPLPSRDFDVPMDSVGDLLMVWDYCSSFGRLLHLSPFSL EDFENAICRKDNNIILIVETHSALLNLLLKENGDYFLASRKKNRKLKITLVTWTEYLCDFIEMVGIPGLSASTSTIKRGHYGLLDVQVKLGILRELVNEV VETALFRKKIDEYVEQRHVLGATFRVEALEEARRKREEKERLKTEDVANGLSNGHFPAEAEDIRCNQDASVNKNNDKNGEVLRKHKRGTISSEEDSNASD RSDDSHSETASKKMGTRQNKEILTGTGEDAAKQMKDEKKGPAEMKTKDQRKEQFDREMEKRVIRTEPLGKDRHYNRYWWLRHDGRMFVESSDCKEWGYYS NKEELNALMGSLNPKGEREKALQKELEKLYSRICAELQKRSNELADEIAMEETVVRRSTRVRAIPRENSANSCLRYVNKWKVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	1.0	0.8964
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	3.2	0.7962
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	8.8	0.7962
AT3G50780			unknown protein		Lus10016789 [exp]	8.9	0.7891
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	10.4	0.7951
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	10.7	0.8064
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	12.4	0.7928
AT1G44760			Adenine nucleotide alpha hydro...		Lus10029664 [exp]	14.1	0.8089
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	14.1	0.7977
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	14.8	0.8360

Compare expression of checked genes

Lus10039626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.