Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 759 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 694 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 679 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 662 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 643 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 642 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 640 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 189 / 2e-55 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029552 [exp] 1047 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 925 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 902 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 679 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10012720 [exp] 669 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10000684 [exp] 611 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 599 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 589 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023106 [exp] 578 / 0 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 896 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 816 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 694 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 689 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 661 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 657 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 650 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 556 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10039627 pacid=23164988 polypeptide=Lus10039627 locus=Lus10039627.g ID=Lus10039627.BGIv1.0 annot-version=v1.0 ATGGATCAACACCCGTCTTTGGCCAATCTCACATATCGTAAACTCGGTTTAGGGCGAGCGGTTCACGGTTGGACCGGGCAGTCCGATTGGGTTTTCAAAA CAATGAAAAGAAGAAGAAAACGCAGTCAAACTAATTTGGGAAACATGAGACTTTTGCCGACGTATGGTGACATTATAGCGATAAAATACACTGGAGTTGA TAATGTGCTTGAAATCCTTAATGAAGATGATAATCGAGGGTATTGGGATGTTGTCTGGAACAAGCCCGGAGAACCCATTATTTTTGACAGATTGGCTGCA ACAGATTTCAGGGTAGTCATGCAAGATGAAGACCAAGTTGAAGTTTCCTTCACCAAGAAATGGAGACCTTCTGATGATACAGTCCCCTTAAATATAGACA AAAGGTATATATTGCGGAGGGGGTGCTCGGGGATTTACATGTACACAATCCTGGAACGCCTCCAAGGATGGCCTGATGTTGATATGGACCAGATCAGAGT TGTTTTCAAGCTCCAGCAGAAGCTGTTTAATTACATGGCGATATCAGATTACAAGCAAAGAGTGATGCCCATGCCTGAGGATCGTGTCACTGGTCAGCCA TTAGCTTACCCTGAAGCTGTTCTCTTGACCCATCCTATCAATCCTGACCTTAGAGGCGAGGTGGATGACAAATACCAGTACTCCTGCGAGGACAAGGACA ACAAGGTTCATGGATGGATATCAGAGGATCCTGCAGTGGGATTTTGGATGATCACTCCCAGCAATGAGTTTCGAGTTGGAGGACCGGTCAAACAGGATCT CACCTCCCATGTCGGCCCAATTGTTCTCAATATGTTCACTAGCACTCATTACGCTGGGAAGGACTTGAAAACTGCATATCGAAATGGAGAGCCGTGGAAG AAAGTTATTGGCCCTGTTTTTGTTTACCTGAACTCGGGAGATACTTCAACACTATGGCGAGATGCTAAGCAACAGATGCATGCGGAGGTAAAGAGCTGGC CGTATGACTTTGTTAACTCGGAAGATTTTCCTACAGCACTTCAACGAGGAAGTGTTGTCGGCCAGTATATCAATGAGAGATTGATGTATGCTGCATCAGC CTATGTTGGGTTAGCCTTGCCAGGAGAAGTGGGATCATGGCAGACTGATGCCAAGGGGTATCAATTCTGGACTCAAGCTGACAGGAGAGGCAGGTTCTTC ATTGACAATGTCAGAGTTGGAACTTACAGTTTGTATGCTTGGGTTCCTGGAATCATTGGGGACTACAAATACAGAGTTAATATCACAATTCAACCTGGAT CGAAGATCGACTTGGGTATGCTTCTTTATGACCCACCAAGGAACGGTCCAACTATCTGGGAAATAGGCATTCCTGACAGGAAAGCTGCTGAATTCCATGT CCCGGACGCATATCCTACACTAATGAATAAATTGTTCAGACAGTATGGATTGTGGTCGCGATACGCTGATATATATCCAAGGCAGGATCTAGTGTATGAA GTTGGTGTCAGCAATTTCTTTGAAGACTGGTTCTTTGCTCATGTTCCAAGAAACGTAGGAAACAACACATTCCGAGCAACCACTTGGAAGATTAACTTTG ATTTAACAACTGTGGAAAAAAGTGGAGACTACACACTCCAATTGGCATTGGCTTCAGCCACTGCATCAGAGCTTCAGGTCCGGTTTAACAACCCGAATGC AAAAGAACCATTGTTCACGACAGGGCTGATAGGAAGAGATAATGCCATAGCAAGACATGGAATCCATGGTTTGTACTGGTTGTACAGCATCAGTGTACCC AGTAACCAACTTGTTGATGGGAAAAACTCGATTTATCTGACTCAAACGAAATCTGACGGCCCGTTTCACGGAGTTATGTACGATTACATTCGGTTAGAAG GGCCTCAAGGAACTTAA
AA sequence Show only first row Show all	>Lus10039627 pacid=23164988 polypeptide=Lus10039627 locus=Lus10039627.g ID=Lus10039627.BGIv1.0 annot-version=v1.0 MDQHPSLANLTYRKLGLGRAVHGWTGQSDWVFKTMKRRRKRSQTNLGNMRLLPTYGDIIAIKYTGVDNVLEILNEDDNRGYWDVVWNKPGEPIIFDRLAA TDFRVVMQDEDQVEVSFTKKWRPSDDTVPLNIDKRYILRRGCSGIYMYTILERLQGWPDVDMDQIRVVFKLQQKLFNYMAISDYKQRVMPMPEDRVTGQP LAYPEAVLLTHPINPDLRGEVDDKYQYSCEDKDNKVHGWISEDPAVGFWMITPSNEFRVGGPVKQDLTSHVGPIVLNMFTSTHYAGKDLKTAYRNGEPWK KVIGPVFVYLNSGDTSTLWRDAKQQMHAEVKSWPYDFVNSEDFPTALQRGSVVGQYINERLMYAASAYVGLALPGEVGSWQTDAKGYQFWTQADRRGRFF IDNVRVGTYSLYAWVPGIIGDYKYRVNITIQPGSKIDLGMLLYDPPRNGPTIWEIGIPDRKAAEFHVPDAYPTLMNKLFRQYGLWSRYADIYPRQDLVYE VGVSNFFEDWFFAHVPRNVGNNTFRATTWKINFDLTTVEKSGDYTLQLALASATASELQVRFNNPNAKEPLFTTGLIGRDNAIARHGIHGLYWLYSISVP SNQLVDGKNSIYLTQTKSDGPFHGVMYDYIRLEGPQGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10039627 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	6.0	0.9241
AT1G70505			unknown protein		Lus10030895 [exp]	8.8	0.9124
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	10.8	0.9186
					Lus10005128 [exp]	11.1	0.8597
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	16.1	0.9218
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	17.8	0.9165
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	19.8	0.9101
AT4G02830			unknown protein		Lus10042573 [exp]	20.0	0.9082
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	20.4	0.8850
					Lus10021373 [exp]	20.4	0.9078

Compare expression of checked genes

Lus10039627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.