Plant FIBer expression Database

Lus10039628 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14890 40 / 0.0002 NHL domain-containing protein (.1)
AT5G65610 39 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001932
[exp]
44 / 6e-06 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1)
Lus10001933
[exp]
44 / 7e-06 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1)
Lus10001942
[exp]
43 / 8e-06 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1)
Lus10033413
[exp]
38 / 0.001 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G000801
[exp]
37 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Lus10039628 pacid=23165042 polypeptide=Lus10039628 locus=Lus10039628.g ID=Lus10039628.BGIv1.0 annot-version=v1.0
ATGGAAGTCGGCGGCGACTGCAATCCAGCTTCCCCACACCCTCACCGGCGACGGTCCTTCCACTTCCTGGCAGCCAGAACCGGGTGCATGACTATGATGG
CGTCACCGACATCTATCCACGAGGAAATGCAGTACACTCGCCTTGAATACTGCGACGACGCCAGATCCAGGTCATCAATTACAGCTGACCGGCGGAGATC
ATCGACAGTAGGAGGGCCGAGGATGTGGAGCAAGTTTATAAAGAGGTTAGTGAAGGATGGGAAGATCAGCAGGATATGCGGATCATCAACCACCAGCACC
AAACGGTTGTCGTTTCATTACGATGCTCTCAGCTATTCCCAGAATTTCGATGATGGCAGCTGGGTTTCATGA
AA sequence
>Lus10039628 pacid=23165042 polypeptide=Lus10039628 locus=Lus10039628.g ID=Lus10039628.BGIv1.0 annot-version=v1.0
MEVGGDCNPASPHPHRRRSFHFLAARTGCMTMMASPTSIHEEMQYTRLEYCDDARSRSSITADRRRSSTVGGPRMWSKFIKRLVKDGKISRICGSSTTST
KRLSFHYDALSYSQNFDDGSWVS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10039628
[exp]
0 1
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Lus10012018
[exp]
1.7 0.8586
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Lus10039094
[exp]
6.3 0.8349
AT5G25140 CYP71B13 "cytochrome P450, family 71, s... Lus10038158
[exp]
6.5 0.8575
AT5G37020 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) Lus10020805
[exp]
17.9 0.7969
AT3G06120 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (... Lus10034031
[exp]
17.9 0.8407
AT3G23255 unknown protein Lus10011825
[exp]
19.3 0.8213
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Lus10042829
[exp]
22.1 0.8145
AT5G52970 thylakoid lumen 15.0 kDa prote... Lus10001399
[exp]
22.6 0.8134
AT5G10770 Eukaryotic aspartyl protease f... Lus10026243
[exp]
23.9 0.7896
AT5G22410 RHS18 root hair specific 18 (.1) Lus10032511
[exp]
25.3 0.7458

Lus10039628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.