Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73150 180 / 4e-50 GTE3 global transcription factor group E3 (.1) AT5G65630 179 / 6e-49 GTE7 global transcription factor group E7 (.1) AT1G06230 174 / 4e-46 GTE4 global transcription factor group E4 (.1.2.3) AT5G10550 171 / 2e-45 GTE2 global transcription factor group E2 (.1) AT1G17790 124 / 3e-30 DNA-binding bromodomain-containing protein (.1) AT3G27260 117 / 2e-27 GTE8 global transcription factor group E8 (.1.2) AT5G14270 112 / 1e-25 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G01770 104 / 2e-23 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G63320 103 / 3e-23 NPX1 nuclear protein X1 (.1.2.3) AT5G46550 94 / 3e-20 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033623 [exp] 189 / 2e-51 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 189 / 4e-51 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 189 / 4e-51 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 142 / 2e-37 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10034067 [exp] 145 / 9e-37 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10007096 [exp] 141 / 2e-35 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10032076 [exp] 135 / 6e-33 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 131 / 1e-31 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10010525 [exp] 108 / 4e-26 AT5G65630 188 / 7e-56 global transcription factor group E7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 239 / 3e-71 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 235 / 8e-70 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.019G090700 [exp] 195 / 8e-54 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 191 / 2e-52 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 167 / 3e-45 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 136 / 2e-33 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 127 / 2e-30 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 116 / 8e-28 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 102 / 1e-22 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 95 / 3e-20 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10039630 pacid=23165055 polypeptide=Lus10039630 locus=Lus10039630.g ID=Lus10039630.BGIv1.0 annot-version=v1.0 ATGGCATCTGCCGTTCTGACCACTCGAAATGAGCCTCATTGGCGTAATCCAAACGATTATATGAGCAAATATACATCCATTTCTGCTGCCACAACCCCCA ATAAAAGCCGTAACAGACTCAGCCACAGCCACAACCATGGCGATTTCCACACTGGCCATGACCCCAAACCATGCCCGCTTCCGCTTCCTTTGTACTCAAA TAGCTCAAGCAAGATCTCTCACAGTCGCTTCGGCAGAACCAAAACTTCTTCTATGCAGCAGTCGGATTTAAGCTCGCCGCCGACATCCGGCAAGAGCGAA GCGAAGGAGTTCCGCCATGGCCGTCGCGTGACGTTCAATCTCACTGCGCATTCTGCGCGTGAACTAGAGGAGCTGAAGAGACGCTTTGTTTCGGAGCTTG AACAGGTCCGTTTCCTCAAAACCAGGTTAGAACGACTCAACTGTGAGGCCCGACCGGCTTACCCGAGTTACCAGTTCTCCCATGGCTATTCTCAGGAACC GCCTGCATTACTTCCGCCGCGTTGTCCTAACCTGATTGGAAATGAAACGGAAAATCATAACCAGAAGGTTAACTCAAGGGAAGCAAAATCGAGGAAGACA TTTCCGGTTCCGGGTCAGGGTTCGAAACGGAGAAGCCAATTTGGGGATGACCTGGAACCTAACCCCAAGCGGCAGGCTAAGGGTTTTCCGGTACAAGACA AGGTTCTGGTGTGCATTATGAAAAGATGCGGGCAAATCCTAGGTAAAGTGATGAAGGACAGGTGTGCGGTGTGGTTCAACCAGCCGGTTGATGTGGAAGG AATGCAGTTGTTCGACTATTACCAAGTAGTGAAGAAGCCGATGGATCTGGGGACTGTGAAGTCAAATCTGGAGGCAGGGTTTTACAAACATCCGAGTGAC TTCGCAAGCCATGTAAGGTTGACATTCTCGAATGCAATGATGTACAATCCAATCGGGCACAGTGTGCACGAAACGGCAAAGAAACTGTTGAAATTGTTCG ACAGTATGTTCGAGCCGGCTAAGAAGAAGTTCGAAGCTGAGCAACAGAGGGTTTCACGAGAGATAGAGGACGTGGCTCGATCATCTCAGCCTGCATTCGT CTACACAGTACTACCGTCTCATGATCAGCTGTATCAGGAAGCTGCAGAGCAGCAATTGCAGGTGGTGGAACAGCAGCAGCCGTTGAGGACTGGGAAGCTG CCGAAGCCTAAGGCAAGGCAACCAAACAAGAGAGGAATGAGTTCATCGGAGAAGTCTCGGTTATGGAAAGAGTTGGAGGAGCTGCCGCATGAGAAGATTG AGCAAGTGGTGCAGACTGTAAAGAGGAGGAATGGGAAGTTGGATAGAGGGGACAACGAGGTGGTACTGGAACTAGATGGTATGGACGTGGAGACGCTGTG GGAGCTGGACAGATTCGTGACCAATTACAGGAAAGCGCTGAAGAAGTTGAAGCGGCAAGAAGAGCAGCTGAGGAATCAAGAGGTGGAATCTAAATCGATT ACTGAGGCTCCTGAAATGAGTGTTGAGGTTGTGAAGAGCAAAGTTGTAGAGGAGGAAGTGGATATTGGAGAGGAGATTCCAGTTGTGAACTATCCGTCAG TGCAGATAGACAAAGATATCAATGGTTGTGGCAGCGACAAGTCTAGCAGCAGCAGCAGCTCTGGTGGTTCAAGTGGCAGCCGCGATTCGTCCTCCTCATC AAGTGATTCAGAATCGGGGAGTAGTTCATCTGAGGAGGATAGCGTGCAGTCACCGAATATGAAAGCAAATGAAGAAGGAGAAGAAGAAGGTGAAATAAAG TGA
AA sequence Show only first row Show all	>Lus10039630 pacid=23165055 polypeptide=Lus10039630 locus=Lus10039630.g ID=Lus10039630.BGIv1.0 annot-version=v1.0 MASAVLTTRNEPHWRNPNDYMSKYTSISAATTPNKSRNRLSHSHNHGDFHTGHDPKPCPLPLPLYSNSSSKISHSRFGRTKTSSMQQSDLSSPPTSGKSE AKEFRHGRRVTFNLTAHSARELEELKRRFVSELEQVRFLKTRLERLNCEARPAYPSYQFSHGYSQEPPALLPPRCPNLIGNETENHNQKVNSREAKSRKT FPVPGQGSKRRSQFGDDLEPNPKRQAKGFPVQDKVLVCIMKRCGQILGKVMKDRCAVWFNQPVDVEGMQLFDYYQVVKKPMDLGTVKSNLEAGFYKHPSD FASHVRLTFSNAMMYNPIGHSVHETAKKLLKLFDSMFEPAKKKFEAEQQRVSREIEDVARSSQPAFVYTVLPSHDQLYQEAAEQQLQVVEQQQPLRTGKL PKPKARQPNKRGMSSSEKSRLWKELEELPHEKIEQVVQTVKRRNGKLDRGDNEVVLELDGMDVETLWELDRFVTNYRKALKKLKRQEEQLRNQEVESKSI TEAPEMSVEVVKSKVVEEEVDIGEEIPVVNYPSVQIDKDINGCGSDKSSSSSSSGGSSGSRDSSSSSSDSESGSSSSEEDSVQSPNMKANEEGEEEGEIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	0	1
					Lus10007141 [exp]	1.4	0.9056
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	3.3	0.8728
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	3.7	0.8780
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	4.9	0.8807
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	7.7	0.8936
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	8.3	0.8985
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	9.2	0.9047
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	9.7	0.8877
AT3G06868			unknown protein		Lus10001474 [exp]	9.8	0.8671
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10001997 [exp]	9.9	0.8675

Compare expression of checked genes

Lus10039630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.