Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65640 220 / 3e-70 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 191 / 2e-59 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 122 / 9e-32 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 119 / 9e-31 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT2G16910 71 / 7e-14 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 64 / 1e-11 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 61 / 6e-11 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G46510 61 / 2e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G46830 56 / 1e-08 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G17880 55 / 2e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002160 [exp] 403 / 2e-143 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10043199 [exp] 115 / 5e-29 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 115 / 7e-29 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10042572 [exp] 63 / 6e-12 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 64 / 8e-12 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 64 / 1e-11 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 64 / 1e-11 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 61 / 1e-10 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022032 [exp] 60 / 5e-10 AT4G09820 181 / 8e-51 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108400 [exp] 224 / 8e-72 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.015G105200 [exp] 126 / 8e-33 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 124 / 4e-32 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.009G136300 [exp] 77 / 6e-16 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 72 / 3e-14 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 67 / 4e-13 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 64 / 2e-11 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 62 / 8e-11 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 60 / 2e-10 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141600 [exp] 58 / 7e-10 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039631 pacid=23165305 polypeptide=Lus10039631 locus=Lus10039631.g ID=Lus10039631.BGIv1.0 annot-version=v1.0 ATGGCTACAACAACCACCACCATCATACCTCCTCCTCCTCTTCCATATCTCCCCTTTGATTTCACTGACCAATTGCATGCTTCTTCTTCTTACCCCCTCT TTGGTGATGGTACTGGGTTCCACATTGATCAAAATTCATCACCTCCATTACTCCAGCAGGAGGATCCCAACAATTACCAGCCAAACATGGTTGTTGAGGA GGAGGAAGGCAATAATGAGGAGATGGTAATGAGCTGCTGCAAATCAGAGGAGGAATTAGGTGCAGAGCAAAGTGAGCAACTTGTTCATCATTTAGAAGCT TCTTCCATGGCTAATCAGGGGTTTTGTGGGGAGATCAAGAAGAGTAATAATAACAAGTCAAAGAGGATTGAAGGGCAGCCTTCCAAGAATCTAATGGCTG AGAGGAGGAGAAGGAAGAGACTCAATGACAGGCTCTCTATGTTGAGATCAATCGTCCCTAAGATCAGCAAGATGGACAGGACTTCAATCCTTGGAGACAC TATAGATTATGTGAAGGAACTTCTTGAAAAAATCAACAGATTGCAAGAAGAGGATGAAGGAGGAGAGAATGATCAAGTGAAGTTGATTGCCAACTTGAAT GACCATAAACCAACTGAACTTCTTGTCAGAAACTCCCCTAAATTTAGTGTGGAGAGGAGAGAAATGGATACCAGGGTGGATATCTGCTGTGCACCAAAGC CAGGACTGCTGCTTTCAACTGTGAATACCATTGAAGCATTAGGACTTGAGATTCAGCAGTGTGTCATTAGCTGCTTCAATGACTTTTCATTGCAGGCTTC TTGCTCCCAGGCATGTTGA
AA sequence Show only first row Show all	>Lus10039631 pacid=23165305 polypeptide=Lus10039631 locus=Lus10039631.g ID=Lus10039631.BGIv1.0 annot-version=v1.0 MATTTTTIIPPPPLPYLPFDFTDQLHASSSYPLFGDGTGFHIDQNSSPPLLQQEDPNNYQPNMVVEEEEGNNEEMVMSCCKSEEELGAEQSEQLVHHLEA SSMANQGFCGEIKKSNNNKSKRIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELLEKINRLQEEDEGGENDQVKLIANLN DHKPTELLVRNSPKFSVERREMDTRVDICCAPKPGLLLSTVNTIEALGLEIQQCVISCFNDFSLQASCSQAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	10.0	0.9151
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	13.6	0.9096
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032132 [exp]	14.3	0.8784
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	14.5	0.9150
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	16.2	0.9078
AT3G53940			Mitochondrial substrate carrie...		Lus10024344 [exp]	17.1	0.8790
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	20.3	0.9062
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	20.5	0.8900
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10039944 [exp]	21.4	0.8794
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	21.7	0.8739

Compare expression of checked genes

Lus10039631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.