Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53440 177 / 6e-50 Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002159 [exp] 702 / 0 AT3G53440 195 / 2e-56 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000700 [exp] 253 / 2e-79 AT3G53440 200 / 1e-58 Homeodomain-like superfamily protein (.1.2) Potri.006G280800 [exp] 237 / 1e-72 AT3G53440 159 / 9e-43 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039632 pacid=23165195 polypeptide=Lus10039632 locus=Lus10039632.g ID=Lus10039632.BGIv1.0 annot-version=v1.0 ATGTCCAGGCGGAGAAAAAACATTCATTCACCCACCGCTGTCGCCGTCGCCGTCGAACGAGGCCAACCCGGCCAGCAAGATCGTTATTTGCGTCGATCTC CACGATTTCTCAGCAGTAAAACTCCAGATCCAAGCACCCCCAACAGTGAACTCTCAAGCGATTGCAGAAATTCCAGACGCAAGCAACCAGCTGGATCAAG AGGAATCTCTTCTGTTCTCGGGTTTTCTGATTCCGGGTCGTCGAGTCCGGACAGTGTGTTGCCGGAAAACTCGGTTCTTCGTCGGTCTGCAAGGCTTTCA TTGTTGGGAACGAAACTGGAGAAGATCAGGAAAAATGCTGAAAAGAATGGGTCTAGCGCTCAGGGAGGAACGGTGTTGGGGCTTGAAGCGGAAGGAGCTC CAAATGTTTGTGAAGATGTGAGAGAGAGTAAGATTACTGGTAAGAGGAAAAGGAATGATGAATGCTCTGAAAGGGAAGAGCCTAGGGTTCTTAGGAAGAA GGATGTCAAAGTCAACAGAGGGACTGAATGTGTCAATGGATGGACAAGGGAGCAAGAATTGGTATTACAGAAAGCTTATTTCTCCGAGAAACCCACCCCT CGTTTCTGGAAGAAAGTTGCAAACATGGTCCCTGGAAAGTCTGCACAGGATTGTTTTGATAAAGTACAGTCCGAAGATGCAACTCCACCTCAACCTTTAC GTAGATCAAGGGCAAAAAAAGTAAACTCTTCTCCTATTGGATCGTTTTCACTTTCTGCTAGCAAAACACTGGATCCCTGTGGGAAGACGCTTAAGTGGTG TTCCACACGGCAAAAGCATCATATGGCACAGAAGACTGTGAGACAGTTATTGGAAAAGCATAATCAGAGGGACCAAGTTCACGAAGCAGATCTATTTTCT CTTCTGGAACCATCCGCTCAAGATTTTCAGCCCTCGACTCCAAAGAATATGAAGCAGAAGCTGCTGTCTCTTGAAAAGTTCTCTGAGAGGTCATCTTCTG AACAAAAGAAGCCTATTTCAAGATTCAGTAACTCACGTCAGCCCGATATCATTACTCCTCCAGTACTGAAGAAAGTGAAAGACAGGTTCTTGCATGAAAG GTATATTGACCAATTACACTGCAGAGAAGCAAAGCGGAAGAAAACAACATCTTCCCGAATTAAGAAATTCACTGCAAGAAAAGAGAATTTGGCAGTGGTG CAGAGTAACATCGTTCAGAAGGTAGATGCTATAAAAACTGCTAAAAATGCTCTAACTTTTGGAGCGAGGGATGCAATAGATCAGCTTCACCGCCTCCAAT CCGATCTAAACAGCGACTCTTCTGATTGTAATGGTGATAATGTTGATGAAGAAGATGATATAGCTTGA
AA sequence Show only first row Show all	>Lus10039632 pacid=23165195 polypeptide=Lus10039632 locus=Lus10039632.g ID=Lus10039632.BGIv1.0 annot-version=v1.0 MSRRRKNIHSPTAVAVAVERGQPGQQDRYLRRSPRFLSSKTPDPSTPNSELSSDCRNSRRKQPAGSRGISSVLGFSDSGSSSPDSVLPENSVLRRSARLS LLGTKLEKIRKNAEKNGSSAQGGTVLGLEAEGAPNVCEDVRESKITGKRKRNDECSEREEPRVLRKKDVKVNRGTECVNGWTREQELVLQKAYFSEKPTP RFWKKVANMVPGKSAQDCFDKVQSEDATPPQPLRRSRAKKVNSSPIGSFSLSASKTLDPCGKTLKWCSTRQKHHMAQKTVRQLLEKHNQRDQVHEADLFS LLEPSAQDFQPSTPKNMKQKLLSLEKFSERSSSEQKKPISRFSNSRQPDIITPPVLKKVKDRFLHERYIDQLHCREAKRKKTTSSRIKKFTARKENLAVV QSNIVQKVDAIKTAKNALTFGARDAIDQLHRLQSDLNSDSSDCNGDNVDEEDDIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	0	1
AT3G22520			unknown protein		Lus10041202 [exp]	2.4	0.9281
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	2.8	0.9395
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	3.2	0.9162
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	5.9	0.9145
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	13.0	0.9162
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	13.4	0.9178
AT2G25270			unknown protein		Lus10001929 [exp]	14.1	0.9078
AT1G02870			unknown protein		Lus10002436 [exp]	17.1	0.8489
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	17.5	0.8799
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	18.7	0.8944

Compare expression of checked genes

Lus10039632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.