Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65660 130 / 5e-40 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002158 [exp] 203 / 1e-68 AT5G65660 146 / 3e-46 hydroxyproline-rich glycoprotein family protein (.1) Lus10019240 [exp] 129 / 4e-36 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10028220 [exp] 85 / 4e-22 AT5G65660 100 / 3e-28 hydroxyproline-rich glycoprotein family protein (.1) Lus10032818 [exp] 80 / 2e-20 AT5G65660 84 / 7e-22 hydroxyproline-rich glycoprotein family protein (.1) Lus10042927 [exp] 75 / 4e-18 AT5G65660 95 / 6e-26 hydroxyproline-rich glycoprotein family protein (.1) Lus10028221 [exp] 67 / 5e-15 AT5G65660 66 / 1e-14 hydroxyproline-rich glycoprotein family protein (.1) Lus10042928 [exp] 63 / 1e-13 AT5G65660 66 / 8e-15 hydroxyproline-rich glycoprotein family protein (.1) Lus10018462 [exp] 41 / 5e-05 AT1G11120 122 / 3e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108100 [exp] 107 / 7e-31 AT5G65660 95 / 6e-26 hydroxyproline-rich glycoprotein family protein (.1) Potri.019G055500 [exp] 103 / 2e-29 AT5G65660 114 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G045900 [exp] 45 / 2e-06 AT1G11120 133 / 2e-40 unknown protein Potri.004G037200 [exp] 42 / 2e-05 AT1G11120 147 / 9e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039633 pacid=23165051 polypeptide=Lus10039633 locus=Lus10039633.g ID=Lus10039633.BGIv1.0 annot-version=v1.0 ATGGAGAGCCCCGATCTTTCTCCCCCGCAGCACCTCGACGCTTCCAGGCCTTCTCTTGGCTTCCCGCTAGGCACTGCTCTCCTTCTCATCGTTATCTTCA GCTTGAGCGGCATCTTCTCCTGCTGCTACCACTGGGACAAGCTCAGGTCTCTCCGCGGACGAGGTGGTTATTCCGATGATTCTCACGACATTGAAGCTGC TCATCTCCCCTTCAAGCCCAACCTCCCCCAATCGGATGTGAAGCAGAATCAGAGGGAGAGCCTGACAGTGGTGATGCCCGGAGATCAGATTCCCACGTTT ATAGCATTGCCCTGTCCGTGCGAGCCGGCCAGAGCAGAGAGAGTGGCGGTCAAAGTGGTCAAGCCTACAAAGCCTCCGCCGATAGCGGTGCCTCTCTACT AA
AA sequence Show only first row Show all	>Lus10039633 pacid=23165051 polypeptide=Lus10039633 locus=Lus10039633.g ID=Lus10039633.BGIv1.0 annot-version=v1.0 MESPDLSPPQHLDASRPSLGFPLGTALLLIVIFSLSGIFSCCYHWDKLRSLRGRGGYSDDSHDIEAAHLPFKPNLPQSDVKQNQRESLTVVMPGDQIPTF IALPCPCEPARAERVAVKVVKPTKPPPIAVPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65660			hydroxyproline-rich glycoprote...		Lus10039633 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	5.7	0.7760
AT2G43630			unknown protein		Lus10013892 [exp]	8.5	0.8208
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	14.0	0.7719
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	24.0	0.8048
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	25.1	0.7722
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	28.7	0.7679
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	35.2	0.7680
					Lus10031757 [exp]	35.7	0.7353
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	36.4	0.7540
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	39.5	0.7623

Compare expression of checked genes

Lus10039633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.