Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37890 246 / 1e-75 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G49665 226 / 5e-68 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 220 / 3e-66 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 209 / 5e-62 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 72 / 1e-13 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 68 / 2e-12 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 48 / 8e-06 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003485 [exp] 495 / 1e-171 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028225 [exp] 84 / 4e-20 AT5G49665 100 / 7e-26 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 60 / 1e-09 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 57 / 8e-09 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 56 / 3e-08 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 56 / 3e-08 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 52 / 3e-07 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 52 / 4e-07 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 50 / 0.0001 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 256 / 4e-79 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 73 / 5e-14 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 71 / 3e-13 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 59 / 1e-09 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 58 / 5e-09 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 56 / 2e-08 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 46 / 2e-05 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.016G001300 [exp] 46 / 3e-05 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039635 pacid=23165218 polypeptide=Lus10039635 locus=Lus10039635.g ID=Lus10039635.BGIv1.0 annot-version=v1.0 ATGAGCGTCAACGACGCTCTGAAAAAGGCAGTGAAAGTGATCGAAGACCGACGTGACAAGAACCCGGTCGCCACCGTCTTAATCCTATCGGAAGATCACC AGGATCGGTCCCGAAACACTTCGCTCTCTTGTTCGCCGCTGGCGTTGGTTTCCACCACGCGCTACTCGCAATTCGGGACTCCCGTTCATTCGATTAGCTT CGGAGATTTGGGCGCGTACAAGCACGCTGCGGTAGAAGATGCCTTCTCCAAGTGTTTGGGTAGGTTGTTACGGGTCGTGGTTCAAGATCTGAAGATTCAA CTCGGGTTCGTTACGGGTTCCGCCCCGGCAGAAATAGTAGCAGCATATCCGCTAACGGGTCCCCCGACTGTGTTCGTACCCGGGTCGATCGGACTAGGCG ATCTCCACGTCGAGGAAGAGAGGGAGGTTCTCCTGGAAGTGAGAGTACCATCATCATCATCTTCGTCCGGTGGGTCCCGACGCCTGTTGTCCGTACGATC GTCCTTTAAGGACACCTCATTGCAGGAGCAAATGAACGGTAGAGATCAGGTGATGATCGTTCCAAGGCCAGAAACCGTCCGATCCGGAAGGCTGAAGAAC GTACACGTGTCGGTTCGAGCAGTAGCGGAATCTCGGAGATTAGTTGAGCACGGCGATTTATCAGGGGCGTATCACTTGTTGTCATCGGCTCGAGCTTTGT TGATGCAGAGGAGCGACAGCTCGGCTGGGGAGTGTCTACAGTGCGTAGAGGCAGAGCTAGCAGAGCTGCAGAAGAAGAAGAAGCCGCTGATGACGACGGG GAGGCAGAGCCAGCAGCAACAGAGGAGCGGTAACCGGCAGTCTGAAGCGCAAGTGGAGGAAAAGACGGAGGCGTTGACGCCGACGTCGGCTTGGCGAGCC GCGGAGAAGTTGGCTAAGTTGGCGATCATGAGGAAGCACATGAACAGAGTCAGCGATTTGCACGGCTTTGAGAACGCAAGATTTTGA
AA sequence Show only first row Show all	>Lus10039635 pacid=23165218 polypeptide=Lus10039635 locus=Lus10039635.g ID=Lus10039635.BGIv1.0 annot-version=v1.0 MSVNDALKKAVKVIEDRRDKNPVATVLILSEDHQDRSRNTSLSCSPLALVSTTRYSQFGTPVHSISFGDLGAYKHAAVEDAFSKCLGRLLRVVVQDLKIQ LGFVTGSAPAEIVAAYPLTGPPTVFVPGSIGLGDLHVEEEREVLLEVRVPSSSSSSGGSRRLLSVRSSFKDTSLQEQMNGRDQVMIVPRPETVRSGRLKN VHVSVRAVAESRRLVEHGDLSGAYHLLSSARALLMQRSDSSAGECLQCVEAELAELQKKKKPLMTTGRQSQQQQRSGNRQSEAQVEEKTEALTPTSAWRA AEKLAKLAIMRKHMNRVSDLHGFENARF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37890		EDA40	embryo sac development arrest ...		Lus10039635 [exp]	0	1
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10039634 [exp]	1.0	0.9362
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	23.3	0.6423
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	33.3	0.5808
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	41.1	0.5820
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10042582 [exp]	46.5	0.5429
AT2G32645			Domain of unknown function (DU...		Lus10020591 [exp]	113.5	0.4371
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	142.1	0.4496
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	191.6	0.4659

Compare expression of checked genes

Lus10039635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.