Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49660 493 / 2e-177 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 390 / 1e-136 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 146 / 1e-41 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 133 / 2e-36 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 132 / 1e-34 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08560 131 / 5e-34 transducin family protein / WD-40 repeat family protein (.1.2) AT5G52820 130 / 5e-34 WD-40 repeat family protein / notchless protein, putative (.1) AT1G62020 125 / 9e-32 Coatomer, alpha subunit (.1) AT2G21390 125 / 1e-31 Coatomer, alpha subunit (.1) AT1G73720 119 / 6e-30 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003487 [exp] 605 / 0 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 393 / 1e-137 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 392 / 2e-137 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 155 / 8e-45 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 154 / 1e-44 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 155 / 1e-42 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 152 / 9e-42 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10002860 [exp] 133 / 6e-36 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 132 / 9e-36 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 545 / 0 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 513 / 0 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 410 / 1e-144 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 153 / 4e-44 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 137 / 2e-37 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 124 / 4e-32 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.015G069700 [exp] 126 / 6e-32 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.005G206600 [exp] 125 / 8e-32 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.012G074800 [exp] 125 / 8e-32 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.018G020200 [exp] 122 / 7e-31 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039636 pacid=23165137 polypeptide=Lus10039636 locus=Lus10039636.g ID=Lus10039636.BGIv1.0 annot-version=v1.0 ATGTCGGATCCAGCTTCTGAACCGTCGCTACCCTTCAAACCCTACACCTTAACCCAAACTTTGACCGGCCACAAACGCCCCATCCCCGCCGTCAAATTCC CCTCCAACGGCCGCCTCCTGGTTTCCTCCTCCGCCGATAAAACCCTCTGCACCTACTCCCTCTCCCCTTCCAACTCTCCTTCCTCACCTTTCACCCATGT CCAAGACTTCCAAGGCCACATTCAAGGTGTCTCCGATGTCGCCTTCTCCTCCGACTCTCGCTTCCTCGTCTCCGCCTCCGACGACAAAACCCTCCGTCTC TGGGACGTCACCACTGGCTCCTCCATCAAGACCCTCCAGGGCCACACCAATTACGTCCTCTGTGCCAATTTCAATCCCCAGAGCAACATGATTGTGTCCG GTTCTTTCGACGAGACCGTCAGGGTTTGGGATGTGAAGAGCGGAAAGTGCTTGAAAGTCCTACCTGCTCACTCCGATCCCGCAACTGCCGTTGATTTCAA TCGGGATGGTTCGCTGATTGTTTCGAGTAGCTATGATGGGTTGTGTCGGATTTGGGATTCGGGGACTGGGCACTGCATGAAGACTTTGATTGATGAGGAG AACCCTCCGGTTTCGTTTGTTAGGTTTTCCCCCAATGGCAAGTTCATTCTCGTTGGCACCCTTGATAACACTTTGAGGCTATGGAACTTCTCAACTGGGA AATTCCTAAAGACTTACACTGGCCACACAAACTCCAAATTCTGTATTTCATCAGCATTCTCGATAACAAACGGGAAGTACATTGTCAGTGGTTCAGAAGA CAATGGTGTATACTTGTGGGAACTTCAGAGTAGGAAAATAGTACAGAAGTTGGAAGGCCATACTGACACTGTTATATCAGTTGCATGCCATCCGACCCAG AACATGATTGCATCTGGTGCACTTGGCAATGACAAAACTGTGAAGATCTGGACTCAGGAAAAGGAATAG
AA sequence Show only first row Show all	>Lus10039636 pacid=23165137 polypeptide=Lus10039636 locus=Lus10039636.g ID=Lus10039636.BGIv1.0 annot-version=v1.0 MSDPASEPSLPFKPYTLTQTLTGHKRPIPAVKFPSNGRLLVSSSADKTLCTYSLSPSNSPSSPFTHVQDFQGHIQGVSDVAFSSDSRFLVSASDDKTLRL WDVTTGSSIKTLQGHTNYVLCANFNPQSNMIVSGSFDETVRVWDVKSGKCLKVLPAHSDPATAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCMKTLIDEE NPPVSFVRFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTGHTNSKFCISSAFSITNGKYIVSGSEDNGVYLWELQSRKIVQKLEGHTDTVISVACHPTQ NMIASGALGNDKTVKIWTQEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	0	1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	2.0	0.9537
AT3G25545			unknown protein		Lus10013064 [exp]	2.4	0.9383
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	3.5	0.9419
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	4.6	0.9367
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	5.3	0.9475
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	7.6	0.9189
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	8.7	0.9400
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	11.6	0.9121
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	13.0	0.9281
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	14.7	0.9183

Compare expression of checked genes

Lus10039636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.