Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 152 / 1e-43 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 144 / 2e-40 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 135 / 2e-37 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 135 / 7e-37 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 82 / 3e-17 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G09820 82 / 4e-17 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46760 77 / 2e-15 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 76 / 6e-15 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 74 / 3e-14 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G16430 72 / 7e-14 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003488 [exp] 439 / 1e-154 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 176 / 1e-52 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 173 / 3e-51 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 152 / 5e-44 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 150 / 3e-43 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 150 / 7e-42 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 84 / 2e-17 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 80 / 2e-17 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 75 / 6e-16 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009400 [exp] 172 / 2e-50 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 165 / 4e-48 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 162 / 5e-47 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 160 / 2e-46 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 79 / 5e-16 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 79 / 6e-16 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 77 / 2e-15 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G054100 [exp] 77 / 2e-15 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 77 / 2e-15 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 76 / 6e-15 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039639 pacid=23165356 polypeptide=Lus10039639 locus=Lus10039639.g ID=Lus10039639.BGIv1.0 annot-version=v1.0 ATGGAGGATTACAAGTTCTTCCAGCACTGTGATACAATCAACTCTGAGTTCGAGCAAAACACTGTTGCTGCAGCAGCACTACTTCCAGGAGAAGCACTCC AGCCATCTTTCTCTTCTGAGAGTTACTCATCTTACTCAGCTGGCTTCCATCGCCAGTCGACTGCACCGAATACATTGACGCCGCCGCCAGCAGCCATAAG TCGCTCCTCAATCAATGAAACATCGCAGACCAAAACCTTTGATGATCACCGACCTAAAAGGCAGCAGAGGAAAACAAACAGCTGGACCTCAAGTGTGACA ACCGAGCACCAGCAGCACATCGATTTCTCTTCCAATCCCAACCCTCAGATGTTCTTTCGACAACTCCAAATCCACCACTTCCTCTCTTCAGCCTTTCTAC AAGAACGGCTTAGAGCTAACAAACCCCTTCCCACGCTCAAGATCACATCATGGCTGAGCTCTTCCTTGACTAGAACCCCTTACCACGCTCAAGATCACAT CATGGCTGAGAGGAAGCGCAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTATCATCCATCGTTCCTGGCCTCAAGAAGATGGACAAAGCTTCGGTTCTA GGGGATGCAATAAAGTATGTGAAGCATCTTCAGGAGAAGATCAAACAGCTGGAGGAGCAGACCAAGAAGAGAACTGTGGAGTCGGTAGTTCTGGTGAAGA GGTGTCAGCTCCCCATGGACGAGGATTCTAACTCCTCTTCTTGTGAAGATGATAACAATAACAGCAGCAAAGGTGAGAAGAAGGGATGCTGGGACTCGAC GTTACCGGAGATCGAAGCCAAGGCATCAGAGAGGGATGTTATGATACGAATCCACTGTGAGAAACAGCCTGGGGTTGTGGCCAAATTGTTGTATGAAGTT GAGAGCCTCAATCTCTCCATTCTGAATAGTAGCGTGTTGCCCTTTGGAAACACAACTGTCGACATCACCGTCATTGCTCAGCTTTGCATAGTTGCATATG AGGAAAAGGACTAG
AA sequence Show only first row Show all	>Lus10039639 pacid=23165356 polypeptide=Lus10039639 locus=Lus10039639.g ID=Lus10039639.BGIv1.0 annot-version=v1.0 MEDYKFFQHCDTINSEFEQNTVAAAALLPGEALQPSFSSESYSSYSAGFHRQSTAPNTLTPPPAAISRSSINETSQTKTFDDHRPKRQQRKTNSWTSSVT TEHQQHIDFSSNPNPQMFFRQLQIHHFLSSAFLQERLRANKPLPTLKITSWLSSSLTRTPYHAQDHIMAERKRREKLSQRFIALSSIVPGLKKMDKASVL GDAIKYVKHLQEKIKQLEEQTKKRTVESVVLVKRCQLPMDEDSNSSSCEDDNNNSSKGEKKGCWDSTLPEIEAKASERDVMIRIHCEKQPGVVAKLLYEV ESLNLSILNSSVLPFGNTTVDITVIAQLCIVAYEEKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	0	1
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	6.2	0.8104
AT5G42785			unknown protein		Lus10002541 [exp]	13.3	0.8340
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	17.8	0.7157
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	20.3	0.8335
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	22.9	0.8073
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	24.0	0.7733
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	25.7	0.7760
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017866 [exp]	27.5	0.7929
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	29.5	0.7356
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	30.1	0.7949

Compare expression of checked genes

Lus10039639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.