Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 148 / 2e-41 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 138 / 1e-37 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22760 134 / 2e-36 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 130 / 1e-34 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46510 80 / 5e-16 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G09820 74 / 5e-14 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 71 / 3e-13 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 71 / 3e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 71 / 6e-13 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 70 / 9e-13 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003488 [exp] 186 / 5e-55 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 182 / 1e-54 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 182 / 4e-54 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 177 / 2e-52 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 168 / 7e-50 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 168 / 1e-49 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024871 [exp] 77 / 6e-15 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 76 / 9e-15 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10018787 [exp] 76 / 1e-14 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081400 [exp] 171 / 1e-49 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 168 / 7e-49 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 159 / 2e-45 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 141 / 3e-38 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 76 / 1e-14 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 76 / 1e-14 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G099700 [exp] 75 / 2e-14 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G142200 [exp] 74 / 3e-14 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.005G221100 [exp] 74 / 3e-14 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 73 / 8e-14 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039640 pacid=23165035 polypeptide=Lus10039640 locus=Lus10039640.g ID=Lus10039640.BGIv1.0 annot-version=v1.0 ATGGAGGATCCAACGATGACGTGGGAGGGCGAGTATCACCAAATAATCCAAAACCCATTCGGCTATCCTCATCAGGATGATTTCAGCTTCGAGCACTACC CATTGATGCACGACAGGTGTTTGATGAATGGCCGCAATGAAACTAATTCTGCGTACAACAATCCCTACACCTCCGTGGTTGACTCCATTGCATCTTTGGG AATCAGAAGCCCCACCACTACTACCACCACTAGTGCTGCTACCCATCATCACATATCTACTGAGTTTAATGGTGCCGAAACGCATCTCCATTCAAAACCT TCTCATCCTCCTCCAATCTCTTCTTCTTCTTCATCTTCTTCTTCTAATTGCATGATTTCTTTTGGCAACCCACCAAGTCCAAATACTACATCTCATGAAC AACAGCTGTGCTACTATGACTGCCTAAATTCTGAAACTAGTAATAATGATGGATCCGTGGGTGGATTTGATGGAAGAAGGCCGATTAGCAATAGAAGGCC TCCTCACGGACAAGATCATGTCATAGCCGAAAGAAAACGCCGCGAGAAGCTCAGCCAGCACTTCATTGCCCTTTCAGCTCTTGTTCCTGGCCTAAAGAAG ACGGACAAGGCGTCGGTTCTGGGAGATGCAACAAAGTACATAAAGCATCTTCAAGAGCGGGTGAAGTCACTCGAGAAGCAAACCAGGTGCAGCCATAACA AAACTGTGGAAATGGTACATTATTATGTCAACAGATCTCAAGTTCTGTGTATGGAAGATGCAGCATGTAATTCGCCATCCACTAATGAGGAAAATTGGAA GGGACGGATATTGTGTAGTAATAATAACGATGATATTAATAATCCATCGTCTTCATCGTGTTGGTCGAGGGGAACACTTCCGGAGATAGAAGCAAGGGTG TGTGATGAAGAGGTGATGATCAGGATACACTGCGAGAGACAGAAAGGGAGCAGCAGCTTGGCTAAACTAATGTCTGAAATTGAGAAGCATCAACTTAATG TCGTCAATACCTCAGTTCTCCCTTTTGGAACTTCTCTTCTTGATATTACTGTTCTTGCTCATCATCATCACCTCCAGGGTATGCAGATGGAAAGCGGCTA TATGTCAAGCAGGATGAGGCATCTTGTGAAGACGTTGCAACGAGTAATTGTACAGTAA
AA sequence Show only first row Show all	>Lus10039640 pacid=23165035 polypeptide=Lus10039640 locus=Lus10039640.g ID=Lus10039640.BGIv1.0 annot-version=v1.0 MEDPTMTWEGEYHQIIQNPFGYPHQDDFSFEHYPLMHDRCLMNGRNETNSAYNNPYTSVVDSIASLGIRSPTTTTTTSAATHHHISTEFNGAETHLHSKP SHPPPISSSSSSSSSNCMISFGNPPSPNTTSHEQQLCYYDCLNSETSNNDGSVGGFDGRRPISNRRPPHGQDHVIAERKRREKLSQHFIALSALVPGLKK TDKASVLGDATKYIKHLQERVKSLEKQTRCSHNKTVEMVHYYVNRSQVLCMEDAACNSPSTNEENWKGRILCSNNNDDINNPSSSSCWSRGTLPEIEARV CDEEVMIRIHCERQKGSSSLAKLMSEIEKHQLNVVNTSVLPFGTSLLDITVLAHHHHLQGMQMESGYMSSRMRHLVKTLQRVIVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	0	1
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	1.4	0.8918
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	3.9	0.8655
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	9.0	0.9136
AT3G61660			unknown protein		Lus10033949 [exp]	13.2	0.8918
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	13.3	0.8648
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	15.5	0.8859
AT5G67265			unknown protein		Lus10042633 [exp]	16.4	0.8537
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	21.7	0.8874
AT3G53980			Bifunctional inhibitor/lipid-t...		Lus10040249 [exp]	24.7	0.8880
AT3G46540			ENTH/VHS family protein (.1)		Lus10023415 [exp]	26.6	0.8879

Compare expression of checked genes

Lus10039640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.