Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 617 / 0 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 561 / 0 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G15020 419 / 5e-147 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 416 / 8e-146 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G47520 389 / 1e-134 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT4G17260 67 / 5e-12 Lactate/malate dehydrogenase family protein (.1) AT3G53910 61 / 1e-11 malate dehydrogenase-related (.1) AT5G43330 62 / 2e-10 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 59 / 2e-09 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011587 [exp] 600 / 0 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 563 / 0 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10020501 [exp] 454 / 4e-161 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) Lus10017939 [exp] 430 / 2e-151 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 427 / 2e-150 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10034458 [exp] 398 / 8e-138 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 396 / 4e-137 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 389 / 4e-134 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 387 / 2e-133 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009100 [exp] 625 / 0 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.009G081600 [exp] 612 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 600 / 0 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.011G096300 [exp] 431 / 4e-152 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 426 / 1e-149 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 414 / 5e-145 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G102000 [exp] 408 / 1e-141 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 403 / 7e-140 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 402 / 2e-139 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 243 / 5e-79 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10039642 pacid=23165263 polypeptide=Lus10039642 locus=Lus10039642.g ID=Lus10039642.BGIv1.0 annot-version=v1.0 ATGCAGGACGCTCCCACTTCTGCAGAACCCATTCAACGCATTGCCAGGATCGCTGCCCACCTCAACCCTCCCAATTTCCAGATGGAGGAAAGTCCGGGAC TCAGCCCGTGGAATTGCAGAGCGAAAGGCGGCTCTCCAGGGTTCAAGGTCGCGATACTGGGAGCTGCAGGTGGAATAGGCCAGCCACTGGCGATGTTGAT GAAGATGAATCCCTTGGTATCGGTTCTTCATTTGTATGATGTGGTTAATACTCCTGGCGTCACTGCTGATATTAGTCACATGGATACTGGTGCTGTGGTA CGCGGCTTCTTGGGACAGCAGCAATTGGAAGATGCTGTTACGGGAGTGGATCTTGTGATCATACCTGCCGGTGTCCCTAGAAAACCAGGAATGACTAGGG ATGACCTGTTCAACATCAACGCTGGAATTGTCAAGACACTTTCCCAAGCAGTTGCTAAGTGCTCGCCAAAGGCCATTGTGAACATAATTAGCAATCCAGT CAACTCTACTGTACCAATCGCTGCGGAAGTTTTCAAGAAAGCTGGAACTTTTGATCCTAGGCGGGTTTTGGGAGTCACAATGCTTGATGTTGTCAGAGCT AACACCTTTGTGGCAGAGGTTTTAGGTCTTGATCCTAGGGAAGTCGAATGTCCAGTTGTTGGCGGCCATGCTGGAGTCACTATTTTACCTCTTCTATCAC AGGTTAAACCTCCAAGCTCTTTCACACAGAAAGAAATTGACTACTTGACCGATCGCATTCAGAATGGCGGGACTGAAGTTGTTGAGGCAAAAGCTGGCAC CGGTTCTGCAACACTATCAATGGCCTATGCAGCCGTTAAATTTGCAGACGCTTGCCTGAGGGGCTTAAGAGGAGATGCTGGTGTTGTAGAGTGCGCATAT ATAGCCTCTCAAGTGACAGAGCTTCCCTTCTTCGCATCTAAAGTAAGACTCGGGCGTACTGGAGTGGAAGAGATATACCCACTCGGTCCCCTTAACGAGT ATGAAAGGACTGGCTTGGAGAAAGCAAAGAAAGAGCTAGCAGAAAGCATTCAAAAGGGTATTTCGTTTGCCGAGAAATGA
AA sequence Show only first row Show all	>Lus10039642 pacid=23165263 polypeptide=Lus10039642 locus=Lus10039642.g ID=Lus10039642.BGIv1.0 annot-version=v1.0 MQDAPTSAEPIQRIARIAAHLNPPNFQMEESPGLSPWNCRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNTPGVTADISHMDTGAVV RGFLGQQQLEDAVTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLSQAVAKCSPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPRRVLGVTMLDVVRA NTFVAEVLGLDPREVECPVVGGHAGVTILPLLSQVKPPSSFTQKEIDYLTDRIQNGGTEVVEAKAGTGSATLSMAYAAVKFADACLRGLRGDAGVVECAY IASQVTELPFFASKVRLGRTGVEEIYPLGPLNEYERTGLEKAKKELAESIQKGISFAEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	1.0	0.9208
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	8.2	0.8579
AT1G74780			Nodulin-like / Major Facilitat...		Lus10036663 [exp]	11.0	0.8155
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	16.4	0.8014
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	22.9	0.8368
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	23.9	0.7916
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	26.2	0.8152
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	30.2	0.8283
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	35.2	0.8044
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	35.4	0.7929

Compare expression of checked genes

Lus10039642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.