Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65730 464 / 9e-167 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G37800 459 / 1e-164 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G13870 308 / 4e-105 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 298 / 4e-101 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G03210 283 / 2e-95 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G57530 276 / 1e-92 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G14130 274 / 6e-92 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 273 / 2e-91 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT1G11545 273 / 2e-91 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT4G25820 272 / 5e-91 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011597 [exp] 564 / 0 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10040121 [exp] 305 / 6e-104 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 305 / 7e-104 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 304 / 2e-103 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 303 / 2e-102 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 295 / 4e-100 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 295 / 8e-100 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10035654 [exp] 290 / 6e-98 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1) Lus10031586 [exp] 283 / 4e-95 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008500 [exp] 489 / 1e-176 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.014G140300 [exp] 309 / 1e-105 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G071000 [exp] 307 / 8e-105 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 306 / 4e-104 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.009G083800 [exp] 291 / 1e-98 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.014G146100 [exp] 285 / 4e-96 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201200 [exp] 282 / 5e-95 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G244200 [exp] 281 / 1e-94 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.011G077320 [exp] 281 / 1e-94 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 281 / 2e-94 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10039643 pacid=23165171 polypeptide=Lus10039643 locus=Lus10039643.g ID=Lus10039643.BGIv1.0 annot-version=v1.0 ATGAGCACAAGTAGTGCCGTAATTTGCATTGCTGTTGTTATTGTAGTGGCTTTTGCTTCTGCTCCCAAATTAGTCTCTTCCCGCCCCACTACTTTCTTGC AGGACTTCAAGGTCACCTGGGGTGATTCCCACGTCCGACAACTTGACGGCGGCCGAGCCATTCAGCTCCTCCTCGACCAAAACTCAGGATGTGGGTTTGC TTCGAAGAGGAAGTACTTGTTCGGACAGGTCAGCATGAGGATCAAGCTCGTCCCTGGAGATTCCGCTGGAACCGTCACTGCTTTCTATCTGAACTCGGAC ACCAACGAAATTAGAGATGAGCTGGACTTCGAGTTTCTGGGGAACCGAAGCGGGCAGCCTTACACGGTTCAAACCAACATATTTGCCCACGGAAAGGGAG ACAAAGAACAAAGAGTCAACCTCTGGTTCGACCCATCTGCCGACTTCCACCTCTACCGTATCCGCTGGAGCCACTCCCAGATTGTGTATTACGTAGATGA TGTGCCAGTGAGGGTATTCAAGAACAACGAAGCGAAAGGAGTGGGGTACCCAAAGTCACAGCCAATGGGAGTGTACTCGACGTTGTGGGAGGCAGATGAC TGGGCAACGAGAGGAGGATTGGAGAAGATTAATTGGAGCAAAGCTCCATTCATGGCCTACTACAAGGACTTTGATATTGAAGGTTGTCCAGTCCCAGGAC CCTCCACTTGTGCTTCCAACCCTAGTAATTGGTGGGAAGGCGCAAATTACAAAGGACTCACTCCACTTGAAGCTAGGAAATACAGGTGGGTTCGTATGAA CCACATGATCTACGACTATTGCACCGACAAATCCCGCTTCCCCGTCCCTCCCACCGAGTGTACCGCCGGCATCCTCTGA
AA sequence Show only first row Show all	>Lus10039643 pacid=23165171 polypeptide=Lus10039643 locus=Lus10039643.g ID=Lus10039643.BGIv1.0 annot-version=v1.0 MSTSSAVICIAVVIVVAFASAPKLVSSRPTTFLQDFKVTWGDSHVRQLDGGRAIQLLLDQNSGCGFASKRKYLFGQVSMRIKLVPGDSAGTVTAFYLNSD TNEIRDELDFEFLGNRSGQPYTVQTNIFAHGKGDKEQRVNLWFDPSADFHLYRIRWSHSQIVYYVDDVPVRVFKNNEAKGVGYPKSQPMGVYSTLWEADD WATRGGLEKINWSKAPFMAYYKDFDIEGCPVPGPSTCASNPSNWWEGANYKGLTPLEARKYRWVRMNHMIYDYCTDKSRFPVPPTECTAGIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	0	1
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	1.4	0.9569
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	1.7	0.9332
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	2.0	0.9582
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	3.0	0.9168
					Lus10016100 [exp]	3.2	0.9269
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	3.6	0.9022
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	4.2	0.9251
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	4.6	0.9212
AT1G79600			Protein kinase superfamily pro...		Lus10035701 [exp]	4.9	0.8696
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	5.7	0.8910

Compare expression of checked genes

Lus10039643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.