Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06710 104 / 1e-26 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT2G22800 101 / 1e-25 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G16780 96 / 1e-23 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT4G37790 94 / 6e-23 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G17460 89 / 4e-21 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT3G60390 88 / 2e-20 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 87 / 2e-20 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 84 / 4e-19 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G01430 79 / 3e-17 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 73 / 1e-15 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019256 [exp] 101 / 2e-26 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10021064 [exp] 101 / 7e-26 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 100 / 6e-25 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 100 / 1e-24 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 98 / 3e-24 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10011569 [exp] 96 / 9e-24 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10004377 [exp] 91 / 2e-21 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 90 / 6e-21 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 89 / 1e-20 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008200 [exp] 119 / 2e-32 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 115 / 6e-31 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.001G229700 [exp] 97 / 1e-23 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.002G113400 [exp] 95 / 2e-23 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.003G079800 [exp] 96 / 3e-23 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.009G023600 [exp] 94 / 2e-22 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.018G133100 [exp] 89 / 9e-22 AT5G06710 163 / 3e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.001G155100 [exp] 91 / 1e-21 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.002G136400 [exp] 91 / 2e-21 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.016G059000 [exp] 91 / 2e-21 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10039644 pacid=23165188 polypeptide=Lus10039644 locus=Lus10039644.g ID=Lus10039644.BGIv1.0 annot-version=v1.0 ATGATGGCTTCCTCTTCCTCATCTTCAGTCGACGATCACGCGCTCCTCCTCGGCTTAACCCTTTCCACTTCCCATCACCATCATCTTCCTCCTCCTCCTA TCTCCCACCACGTCACTGCCGTCACCAAGCCCAATAACAACGCGACGGATGAGCCTTCCCTCAGCCTCAGCCTCCTTTCATCCTCCATCATCGTAGCCCC CGATCAATCCAACAAGACTGCTACTACTACTACCACCGTCACTGCTCATGCCTCTGCTGCTGCTGTTGTAATAGTCAAGAAAGACAGCTGCGCCGCTGAA GACCACCAGCGGCGTCAGGCGTCGCCGCCTCTGAGCGCGGTGTCGTCCTTCTCTGCCAGCGGAGGGAATAAGGTAGTGGTGATGAAGAGGGAAAGGGACC TTAGTATGAGTACTACGGAGGAGATGGAAGCCGATCAGAGGAGGAACAGCGATCTAGACGACGACGTCGACGCTGCCGGATCCGCCCGAAAAAAGCTCCG CCTCACTAAAGACCAGTCCGCCCTCCTGGAAGGCAGCTTCAAGCACCACTCCACGCTTAACCCCAAGCAAAAGCAAGCTCTGGCGAGGCAGTTGGGATTA CGGGCGAGGCAGGTTGAAGTTTGGTTCCAGAACAGACGAGCCAGGAGAAGGAGAAGGAAAAGAAAGAAGAAGAAGAAGAAAGAAGTTTAG
AA sequence Show only first row Show all	>Lus10039644 pacid=23165188 polypeptide=Lus10039644 locus=Lus10039644.g ID=Lus10039644.BGIv1.0 annot-version=v1.0 MMASSSSSSVDDHALLLGLTLSTSHHHHLPPPPISHHVTAVTKPNNNATDEPSLSLSLLSSSIIVAPDQSNKTATTTTTVTAHASAAAVVIVKKDSCAAE DHQRRQASPPLSAVSSFSASGGNKVVVMKRERDLSMSTTEEMEADQRRNSDLDDDVDAAGSARKKLRLTKDQSALLEGSFKHHSTLNPKQKQALARQLGL RARQVEVWFQNRRARRRRRKRKKKKKKEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	2.0	0.9212
AT1G72300			Leucine-rich receptor-like pro...		Lus10019722 [exp]	2.8	0.9067
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	4.9	0.8901
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	5.1	0.8963
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	6.3	0.8916
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	8.7	0.9296
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	12.2	0.9041
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10028579 [exp]	16.0	0.8938
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	17.7	0.8466
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	23.0	0.9148

Compare expression of checked genes

Lus10039644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.