Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) AT2G24280 261 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1) AT5G22860 156 / 2e-43 Serine carboxypeptidase S28 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011603 [exp] 461 / 3e-161 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 224 / 6e-70 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10021325 [exp] 223 / 2e-68 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10021400 [exp] 182 / 1e-52 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 181 / 2e-52 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 150 / 6e-41 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 130 / 1e-33 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10024449 [exp] 39 / 0.0002 AT2G24280 48 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008100 [exp] 380 / 3e-129 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G111000 [exp] 255 / 6e-81 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G207900 [exp] 252 / 1e-79 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G232300 [exp] 199 / 4e-59 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 195 / 6e-58 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 194 / 3e-57 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 185 / 3e-54 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 184 / 2e-53 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 182 / 1e-52 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 179 / 8e-52 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10039645 pacid=23165038 polypeptide=Lus10039645 locus=Lus10039645.g ID=Lus10039645.BGIv1.0 annot-version=v1.0 ATGGCTAATCCTACCTTAGTTTACCAACAAATAATTGAAACAATGTTGGTATTGCGTGGTTTGATTTCTGCCTATCGTCCTTTTATCCGCTCCTTACGCA ATCGCTCGGAATCTGTTTCCTTTACTGAGTTACATGCCTTATTGCTAACCGAAGAACTAGACATTGCTGCCGATGAGGCATCGACGCTGGTCGATCCTAT TGTTAATTTTGCAGGACGCGGCCACTATGGAACCCGGGGTTGCGGTCGTCACTCCCCCGGTACTCCCTTCATTAGCTCCAATTCTTCAATTCGAAAATAT CGTGCCACTGGACACCGCGAGAGTACCAGCTGCTTTGATACTATAAAGAAGTCATGGGGTGAAACAGAGGCTGAGGGTCGGAAAGACAATGGCCTTTCAC TAGTAACCAAAACTTTCAATTTCTGCAGGGAGTTGAAAAGTACTGGAAATCTCGTCAACTGGCTAGAATCTGCTTATAGTTATTTAGCAATGGTGGATTA CCCTTATCCCTCTTCCTTTATGATGCCTCTGCCTGGCCACCCAATTAGAGAGGTCTGCGGAAAGATTGATGGTAGTCCTGAGGGGAGTAGCATATTGGAG CGCATTTTTGCAGGTGTCAGTGTCTATTATAATTACACTGGCACAGTTAGCTGCTTTGAACTTGATGATGATCCACATGGTTTGGATGGTTGGAACTGGC AGGCATGCACCGAGATGGTTATGCCAATGTCTAGTGACAAGGAAACGAGTATGTTTCCTCCCTATGAATTCAGTTACTCTGATTTCCGAGAAGACTGTTG GAGCAGCTTCAAAGTGCTGCCAAGGCCTAGATGGGTAACAACAGAATTTGGTGGACATGATATCCGCACTGCCTTGGAAACATTTGGGAGCAACATGATC TTCTCTAACGGTCTGCTGGATCCATGGAGTGGTGGCAGCGTTTTGCAGAATATTTCTGAAACAATTGTTGCCCTAGTTACTAAAGAAGGTAAACCACAAA CTCAACCTCAACTTGCTACATATCGGGAAGTTCAAATGAACATTACCTTGTTGATTTGGGCAATGAACATTACATAA
AA sequence Show only first row Show all	>Lus10039645 pacid=23165038 polypeptide=Lus10039645 locus=Lus10039645.g ID=Lus10039645.BGIv1.0 annot-version=v1.0 MANPTLVYQQIIETMLVLRGLISAYRPFIRSLRNRSESVSFTELHALLLTEELDIAADEASTLVDPIVNFAGRGHYGTRGCGRHSPGTPFISSNSSIRKY RATGHRESTSCFDTIKKSWGETEAEGRKDNGLSLVTKTFNFCRELKSTGNLVNWLESAYSYLAMVDYPYPSSFMMPLPGHPIREVCGKIDGSPEGSSILE RIFAGVSVYYNYTGTVSCFELDDDPHGLDGWNWQACTEMVMPMSSDKETSMFPPYEFSYSDFREDCWSSFKVLPRPRWVTTEFGGHDIRTALETFGSNMI FSNGLLDPWSGGSVLQNISETIVALVTKEGKPQTQPQLATYREVQMNITLLIWAMNIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	0	1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	1.0	0.8658
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	8.7	0.8626
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	9.5	0.8167
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	11.2	0.8399
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	11.7	0.8648
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	15.0	0.7856
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	17.9	0.8603
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	20.1	0.8348
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10026299 [exp]	22.6	0.8411
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	24.7	0.7727

Compare expression of checked genes

Lus10039645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.