Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37770 725 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT5G65800 692 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT3G49700 689 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT2G22810 683 / 0 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G08040 598 / 0 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT4G26200 499 / 1e-174 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G61510 488 / 7e-170 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G11280 480 / 2e-166 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G01480 476 / 7e-165 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT5G51690 396 / 1e-133 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007223 [exp] 915 / 0 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10011565 [exp] 796 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007714 [exp] 544 / 0 AT3G49700 585 / 0.0 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) Lus10010243 [exp] 529 / 0 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 519 / 0 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 514 / 1e-180 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10007910 [exp] 482 / 5e-167 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10017521 [exp] 481 / 5e-167 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10036396 [exp] 476 / 1e-164 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012600 [exp] 748 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 737 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 629 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 520 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.018G067000 [exp] 510 / 5e-179 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.001G099400 [exp] 508 / 1e-177 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 499 / 2e-174 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 493 / 1e-171 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.015G132100 [exp] 394 / 3e-132 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 372 / 2e-123 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10039647 pacid=23165290 polypeptide=Lus10039647 locus=Lus10039647.g ID=Lus10039647.BGIv1.0 annot-version=v1.0 ATGGGTATATTATCCAGGAAAGCGACATGCAATACTCATGGCCAAGATTCGTCCTACTTCATGGGATGGGAGGAGTACGAGAAGAACCCACATGACCAAC TCACCAACCCATCTGGCATGATCCAGATGGGTTTGGCCGAGAACCAGCTATCATTCGACCTTATCGAGTCATGGCTCGCCAACAACCCCGACCCTTGCAA CTTTAAGCACGACAACGGCCACTCTGTGTTCCGTGAGCTTGCACTCTTCCAGGACTACCATGGCCTCCCTTCCTTTAAGAAGGCATTTGTGGACTACATG TCCGAAATTAGAGGAACCAAAGTCACTTTCGATCAAAACAACCTTGTTCTCACCGCCGGTGCAACCTCCGCCAACGAGACCCTCGTCTTCTGTCTTGCCG ATCACGGCGATGCCATCCTCATCCCCACTCCTTATTATCCAGGATTTGACAGAGACCTAAAGTGGAGAACCGGTGTGGAAATCGTGCCAATTCACTGCAC TAGCTCAAACGGCTTCAAAATCACTGCGCGGGCTCTTGAACAAGCTTACTTGGATGCTCAGACACGGAACCTCAAGGTCAAAGGGGTCCTCGTCACCAAC CCATCAAACCCATTGGGGACCACTTTAACCCGAGCCGAACTCAACCTCCTTGTCAACTTCATCTCCGACAAGCAAATCCACCTCATCAGCGACGAAATCT ATTCCGGTACTGTCTTCAACTCTCCCGGATTCATCAGCATCATGGAAGTGTTGAAAGACAAGAAGCTCGCCGACAACACCGAGCTCTGGAACCGGGTCCA CATCGTCTGCAGCCTGTCCAAGGACCTCGGCCTCCCCGGTTTCAGGGTCGGAGCAATCTACTCCAATGACCAGCGCGTGGTATCAGCTGCCACTAAGATG TCAAGCTTTGGGCTCATCTCGTCCCAGACTCAGTACCTCCTATCGGCTCTCCTCTCCGACAAAAAGTTCACCAAGCACTACGTGGCGGAGAGCGGGAGGA GGTTGAAGCAGCGTCAGAGGTCGCTGCGGAAGGGGTTGGAGAGCATTGGGATTAGCTGCCTGAAGAGTAATGCGGGTTTGTTCTGTTGGGTTGACATGAG GCATCTTCTGGAATCAAACACGTTCGAGGCTGAGATAGAGCTGTGGAAGAAGATAGTCTACGACGTGAAGCTGAATATCTCGCCTGGGTCGTCGTGCCAT TGCGTGGAGCCAGGGTGGTTCAGGGTTTGTTTTGCGAATATGTCGGAGGATACGTTGAATTTAGCCGTGGAGCGCCTCAAGACATTTGTCGGGACGGCTG TTACTACACGCAGCCGTAGCAGTCACGAGATGATGAAGGGATTGAGGAAGAAGAATCTAACCAAGTGGGTTTTCCGGCTATCGTATTCTTCCGACCGTGA GCCGGAAGAGCCGCACATAGACCCCCCCCCCCCCCCCCCCCCCCCGCCGCTGTTGCCGTCACTTGGCATGCAGCATTTGGTTTGGTCCCATTTTTTTCAC CGAGGAAAATAA
AA sequence Show only first row Show all	>Lus10039647 pacid=23165290 polypeptide=Lus10039647 locus=Lus10039647.g ID=Lus10039647.BGIv1.0 annot-version=v1.0 MGILSRKATCNTHGQDSSYFMGWEEYEKNPHDQLTNPSGMIQMGLAENQLSFDLIESWLANNPDPCNFKHDNGHSVFRELALFQDYHGLPSFKKAFVDYM SEIRGTKVTFDQNNLVLTAGATSANETLVFCLADHGDAILIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFKITARALEQAYLDAQTRNLKVKGVLVTN PSNPLGTTLTRAELNLLVNFISDKQIHLISDEIYSGTVFNSPGFISIMEVLKDKKLADNTELWNRVHIVCSLSKDLGLPGFRVGAIYSNDQRVVSAATKM SSFGLISSQTQYLLSALLSDKKFTKHYVAESGRRLKQRQRSLRKGLESIGISCLKSNAGLFCWVDMRHLLESNTFEAEIELWKKIVYDVKLNISPGSSCH CVEPGWFRVCFANMSEDTLNLAVERLKTFVGTAVTTRSRSSHEMMKGLRKKNLTKWVFRLSYSSDREPEEPHIDPPPPPPPPPLLPSLGMQHLVWSHFFH RGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	1.4	0.9266
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	3.5	0.8842
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	3.9	0.8801
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	5.0	0.8643
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	5.9	0.8621
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	7.5	0.8524
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.7	0.8792
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	7.9	0.8425
AT5G19340			unknown protein		Lus10010529 [exp]	9.9	0.8342
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	11.0	0.8628

Compare expression of checked genes

Lus10039647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.