Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 367 / 1e-129 unknown protein AT5G65810 358 / 8e-126 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007228 [exp] 479 / 6e-174 AT3G49720 401 / 6e-143 unknown protein Lus10011564 [exp] 422 / 6e-151 AT3G49720 422 / 4e-151 unknown protein Lus10019279 [exp] 416 / 1e-148 AT3G49720 421 / 7e-151 unknown protein Lus10032796 [exp] 305 / 5e-105 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 300 / 4e-103 AT3G49720 332 / 1e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 360 / 1e-126 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 348 / 8e-122 AT3G49720 342 / 1e-119 unknown protein Potri.002G114000 [exp] 320 / 7e-111 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039648 pacid=23165148 polypeptide=Lus10039648 locus=Lus10039648.g ID=Lus10039648.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGGCAAGTCGGCTCCGCCAGGCGATTCGTCGACTCCGGCAACTTCCCTTTCTCTTCTTCTGTCCATCCCAAGTCCCGCACTTCTCCTCTCA TCTCCATCGCTCTCGTCGTCCTGGGAGCTCTCCTTCTTATCGCCTATGCTTATGGCGGTCCAGGTTTGTTCAGAGGTAACGGAGTTAGTAAGATCGAAGG TGACTATACCTGCACGGCAGAAGTCCAAAAAGCAATACCTTACCTGAAGAAAGCATATGGAGACAACATGCGTAAAGTCTTGCACGTTGGTCCTGATACT TGTGGTGTTGTCTCGACATTGTTGAAAGAAGAGGAAACTGAAGCTTGGGGTTTGGAGCCATATGACATAGAGGATGCAGATGCAAGCTGCAAAAATCTTG TCCGAAAGGGTCTTGTCCGTGTTGCTGATGTCAAATTCCCTCTTGCCTACAAGCCAAAATCATTCTCACTTGTTATTGTGTCAGATGCTCTTGATTACCT TTCACCCAAGTACCTGAACAGGACACTTCCAGAACTAGCCAGAGTTGCTACGGATGGTGTCGTCATATTTACAGGTCACCCTGGCCAGCAGAGAGCTAAA GTAGCAGAGTTGTCCAAATTTGGACGGCCGCCGAAAATGAGGAGCTCTTCATGGTGGATTCGCTATTTTGTTCTAACCAGCTTACAAGAGAATGAAGTTG CTCAAAAGAAGTTTGATCAGGCAGCTTTTAAGAGGGCGTACAAGCCAAACTGTCAAGTTTTCCATCTCAACCCGTATCGCTAG
AA sequence Show only first row Show all	>Lus10039648 pacid=23165148 polypeptide=Lus10039648 locus=Lus10039648.g ID=Lus10039648.BGIv1.0 annot-version=v1.0 MSRRQVGSARRFVDSGNFPFSSSVHPKSRTSPLISIALVVLGALLLIAYAYGGPGLFRGNGVSKIEGDYTCTAEVQKAIPYLKKAYGDNMRKVLHVGPDT CGVVSTLLKEEETEAWGLEPYDIEDADASCKNLVRKGLVRVADVKFPLAYKPKSFSLVIVSDALDYLSPKYLNRTLPELARVATDGVVIFTGHPGQQRAK VAELSKFGRPPKMRSSSWWIRYFVLTSLQENEVAQKKFDQAAFKRAYKPNCQVFHLNPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49720			unknown protein		Lus10039648 [exp]	0	1
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	2.0	0.8915
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	2.0	0.8806
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	4.6	0.8432
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	6.0	0.8683
AT4G35320			unknown protein		Lus10001621 [exp]	7.2	0.8560
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	7.4	0.8459
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	8.5	0.8131
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	8.7	0.7915
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	9.2	0.8283
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	9.2	0.8169

Compare expression of checked genes

Lus10039648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.