Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37760 771 / 0 SQE3 squalene epoxidase 3 (.1) AT1G58440 754 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G22830 734 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 470 / 1e-160 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 455 / 2e-154 SQE6 squalene monoxygenase 6 (.1) AT5G24140 421 / 3e-141 SQP2 squalene monooxygenase 2 (.1) AT5G24155 64 / 2e-12 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011732 [exp] 1007 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 803 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10018654 [exp] 802 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007600 [exp] 830 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.002G114500 [exp] 795 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G146700 [exp] 782 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.015G120900 [exp] 765 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 604 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 604 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 593 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 167 / 1e-49 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 135 / 2e-37 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121320 [exp] 53 / 2e-08 AT4G37760 54 / 2e-09 squalene epoxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF08491 [flax] [poplar] SE Squalene epoxidase
Representative CDS sequence Show only first row Show all	>Lus10039649 pacid=23165105 polypeptide=Lus10039649 locus=Lus10039649.g ID=Lus10039649.BGIv1.0 annot-version=v1.0 ATGAATTCAGTTGGGAGCTTAGGCAGCAGCATGGAGCCATTACTACCACAAAAACAAGCAGCGGTAGCATCATCATCATCAAGACATTTAAAGGGTCGGC ACAGATCAACTCCTCTCCATAAAACCCCACCCTCTCAATTTTTGCCAGCTACCTTTTCGCCTCTGCCGACACTTCAATCCAACCTATCCTCCTCCCCAAG GCTGAATAATAAGCGAAATTCTGTAGCTGTGCCTGTGGATTCAATCTCTTCTCTTTCTTCTGGTTTTAATTCCACAATGGCGGTTGCGGGGACCGAATCC TGCGTTATTTTGGGAACTATTCTCGCTCCCCTCATTGGGCTGGTTATCCTGTACCGCTTTTTGGGCAGCGGAGATGGTACAAAATTGGGCAATAAGGAGA AGGGAGAGCTATTTAGGGGAGAAGCTCAGACGCGAAACGACGCTGGAGTTGTAGAATGGTCGGCGGATACTGGTGCTGACGTCATCGTCGTCGGAGCCGG AGTAGCTGGAGCTGCTCTAGCCTATACGCTTGGAAAGGATGGGAGACGAGTTCTTGTTATAGAACGAGATCTGACGGAGCCTGACAGAATTGTTGGGGAG CTTCTTCAACCTGGAGGGTATCTTAAACTCATTGAACTTGGACTTCAGGACTGTGTGGATGAGATTGATGCCCAGAGAGTAGTTGGATATGCTCTCATCA AGAATGGTAAGAGTACTAGACTTTCATATCCCTTGGACAAGTTCCAGGAAGACGTTGCTGGGAGGAGCTTCCATAATGGGCGTTTCATTCGGAGGATGAG AGAAAAAGCTGCCACCCTCCCCAATGTCCGATTGCAGCAAGGGACGGTGACTTCCTTACTTGAAGAAAACGGAGTGATTAAGGGGGTTCAATACAAAACT AAAGATGGGTTGGCACTTAACGCTTATGCTCCTCTCACCGTCGTGTGTGATGGTTGCTTCTCGAATCTGAGACGCAACCTGTGCACGCCAAAGGTGGATG TGCCCTCTTGCTTTGTGGGTTTGATCCTAGAGAAGTGTCAACTTCCATTTGCAAATCATGGCCATGTCATTCTAGCAGATCCATCACCAATTCTGTTTTA CCCAATCAGCAGTACCGAAATCCGCTGCTTAGTTGATGTGCCTGGACAGAAAGTACCTTCAATTGGAAACGGTGAAATGGCCAAGTATTTGAAGAACGCT GTCGCCCCTCAGGTCCCGCCAGAGCTTCGAGATGCCTTTGTATCAGCTGTAGACAAAGGTAATATCAGGACGATGCCTAACCGAAGCATGCCTGCAAACC CACAACCAACCCCTGGAGCTCTTCTGATGGGTGATGCTTTCAATATGCGACATCCATTGACTGGTGGCGGGATGACGGTTGCACTCTCTGATATCGTCGT CCTTCGGGATCTCCTCAAGCCACTTAGAGACTACCATGATGCGGCCTCCCTGACACAGTATCTCGAATCCTTCTACACCCTGCGCAAGCCTGTTGCTTCA ACTATAAACACACTAGCAGGTGCCTTGTACAAGGTGTTCTCTGCTTCCCCTGATGAGGCAAGGAAAGAAATGCGTGAAGCTTGCTTCGACTATTTGAGCC TTGGAGGAGTTTGTTCATCGGGGCCAGTGGCTTTGCTTTCTGGTTTAAACCCTCGCCCCTTGAGTTTAGTCCTCCATTTCTTTGCAGTTGCAATCTATGG CGTTGGTCGCTTGCTCCTTCCATTTCCTTCTCCTAAAGGTTTCTGGATTGGAGCTAGACTAATCACAAGCGCATCGGGTATCATATTCCCGATAATCAAA GCAGAAGGAGTGAGGCAAATGTTCTTCCCTGCTACCGTACCAGCTGTCTATCGACCTCCTCCTGTCAATTGA
AA sequence Show only first row Show all	>Lus10039649 pacid=23165105 polypeptide=Lus10039649 locus=Lus10039649.g ID=Lus10039649.BGIv1.0 annot-version=v1.0 MNSVGSLGSSMEPLLPQKQAAVASSSSRHLKGRHRSTPLHKTPPSQFLPATFSPLPTLQSNLSSSPRLNNKRNSVAVPVDSISSLSSGFNSTMAVAGTES CVILGTILAPLIGLVILYRFLGSGDGTKLGNKEKGELFRGEAQTRNDAGVVEWSADTGADVIVVGAGVAGAALAYTLGKDGRRVLVIERDLTEPDRIVGE LLQPGGYLKLIELGLQDCVDEIDAQRVVGYALIKNGKSTRLSYPLDKFQEDVAGRSFHNGRFIRRMREKAATLPNVRLQQGTVTSLLEENGVIKGVQYKT KDGLALNAYAPLTVVCDGCFSNLRRNLCTPKVDVPSCFVGLILEKCQLPFANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSIGNGEMAKYLKNA VAPQVPPELRDAFVSAVDKGNIRTMPNRSMPANPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDYHDAASLTQYLESFYTLRKPVAS TINTLAGALYKVFSASPDEARKEMREACFDYLSLGGVCSSGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKGFWIGARLITSASGIIFPIIK AEGVRQMFFPATVPAVYRPPPVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	2.0	0.8928
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	5.3	0.8611
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	6.0	0.8684
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	6.5	0.8658
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037734 [exp]	7.2	0.8330
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	10.5	0.8209
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	11.0	0.8452
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	14.0	0.8535
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	15.5	0.7866
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	16.1	0.8359

Compare expression of checked genes

Lus10039649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.