Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49790 255 / 3e-82 Carbohydrate-binding protein (.1) AT1G10150 252 / 2e-80 ATPP2-A10 Carbohydrate-binding protein (.1) AT1G59510 246 / 2e-78 CF9 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011718 [exp] 541 / 0 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1) Lus10003785 [exp] 292 / 3e-96 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1) Lus10007727 [exp] 285 / 1e-93 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1) Lus10012487 [exp] 279 / 5e-91 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1) Lus10018663 [exp] 241 / 1e-77 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006600 [exp] 311 / 4e-103 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 298 / 3e-98 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1) Potri.002G116400 [exp] 292 / 6e-96 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 290 / 5e-95 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039651 pacid=23165281 polypeptide=Lus10039651 locus=Lus10039651.g ID=Lus10039651.BGIv1.0 annot-version=v1.0 ATGGACTTGGGTTTGGTCAAGAAAACAAACAGGAGCTGGGTTGTCCTGTTAGCAGCTGCTTTCTCTTCCTACGCCGCTTATAAAGTCTACAACTCGCCTT CCCTTTCCAGGAAACGCACTAGGTTCCTTCAGCTTCTCAGAGCTTTCTCTTCTATGGCGGATGCAATCTCCCATTCCGCCGAAACAATCTCCCTCGTCTC AAAGGAATTGAAACTTTTCCTCCAATCCGAATCCGACCAACTCCCCAACAGCTTGAACCAAATGGCCAAACTCGCCAGGTCAGACGAGTTCTCCCAATCT GTCGTCGTAATCACCAAAGCCCTGACCATCGGAATCTTGAGTGCGCACCAATCCAATTCCAATTCCGGTTCCAATCCAGGGTTCTTGGAAAAGGTAATCG ACAAGCTCTCAACCCCATCTGGGTGCGGATTCGTTTCTTCAATCGCCGGTAGCTTCGCCAGAAACTTGGTCAAGGCATATTACGACTGCTCCTCGAAACA GGGGATCAGCAGCAGCTCTGGTTCGGAATTGATGGAGTTGATCTGCAGCCCTAAAAGTAAATCCCTAATCGCGGACTGCACTCAGATGTTCGTGAGCACC GCCGTCACCGTCTACCTAGAGAAAACTCTTCATATCAACCCTTACAACCAGCTCTTCGCTGGATTGACCGATCCAAAGCACGAGAAGCAAGTGAAAGATC TGGTGATTTCAGTGAGCAATTCCGCAATTACGACGCTGGTGAAGTCGTCTCACTCTGTACTCACATGTCCGGAGGACTATCCTGATAAACCGTCAAAGCA GCGAAAAAGGAAATGGGAGGGCGGAGGAGGAGACTGGGTGGGGAAAGTGTCGTCGACGCTGGCGGTGCCGAGTAACAGGAAGCTAGTGGTGGATGTGACC GGGAAAGTAACGTTCGAGACAGTTAGGTCGGTGCTGGAATTTGTTGTGGAGAGGGTAAGAGACGGTGTAAAGGAATGCGTGGAGGTGGTTGAAGAAGTGG TGGTGGAAGGTGGGTTTGAAGCTGTCAGTTACGTGACGGCGAAATCGTTTGCTGTTACTGATTTGTGTCTTTCTGCATTCCTGGATGTGTTGGATTCTGC AACCTGGATTCTTATTCCTGCTTGA
AA sequence Show only first row Show all	>Lus10039651 pacid=23165281 polypeptide=Lus10039651 locus=Lus10039651.g ID=Lus10039651.BGIv1.0 annot-version=v1.0 MDLGLVKKTNRSWVVLLAAAFSSYAAYKVYNSPSLSRKRTRFLQLLRAFSSMADAISHSAETISLVSKELKLFLQSESDQLPNSLNQMAKLARSDEFSQS VVVITKALTIGILSAHQSNSNSGSNPGFLEKVIDKLSTPSGCGFVSSIAGSFARNLVKAYYDCSSKQGISSSSGSELMELICSPKSKSLIADCTQMFVST AVTVYLEKTLHINPYNQLFAGLTDPKHEKQVKDLVISVSNSAITTLVKSSHSVLTCPEDYPDKPSKQRKRKWEGGGGDWVGKVSSTLAVPSNRKLVVDVT GKVTFETVRSVLEFVVERVRDGVKECVEVVEEVVVEGGFEAVSYVTAKSFAVTDLCLSAFLDVLDSATWILIPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10039651 [exp]	0	1
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	3.3	0.9031
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	7.9	0.8819
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	16.6	0.8795
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	23.5	0.8529
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	25.2	0.8740
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	25.3	0.8322
AT4G13530			unknown protein		Lus10030342 [exp]	25.8	0.8573
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	26.1	0.8707
AT1G07040			unknown protein		Lus10013272 [exp]	30.0	0.8607
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	31.0	0.8402

Compare expression of checked genes

Lus10039651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.