Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22870 414 / 1e-146 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G11480 268 / 4e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 105 / 3e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12080 47 / 1e-05 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G08410 44 / 9e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 44 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 41 / 0.0007 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011703 [exp] 531 / 0 AT2G22870 427 / 5e-152 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022126 [exp] 278 / 5e-93 AT5G11480 418 / 8e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011673 [exp] 277 / 1e-92 AT5G11480 418 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009919 [exp] 102 / 3e-24 AT5G58370 473 / 9e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018881 [exp] 44 / 9e-05 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10028574 [exp] 44 / 0.0001 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10004103 [exp] 44 / 0.0002 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023835 [exp] 43 / 0.0002 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10013359 [exp] 43 / 0.0002 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006300 [exp] 425 / 6e-151 AT2G22870 434 / 2e-154 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G243200 [exp] 294 / 2e-99 AT5G11480 422 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G037000 [exp] 283 / 5e-95 AT5G11480 421 / 7e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G006501 [exp] 193 / 2e-62 AT2G22870 199 / 2e-65 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G007450 [exp] 135 / 3e-40 AT2G22870 131 / 3e-39 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 92 / 8e-21 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G021900 [exp] 43 / 0.0001 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.009G017000 [exp] 42 / 0.0003 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G402500 [exp] 41 / 0.0008 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G241100 [exp] 41 / 0.001 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10039653 pacid=23165138 polypeptide=Lus10039653 locus=Lus10039653.g ID=Lus10039653.BGIv1.0 annot-version=v1.0 ATGCTTCTCCGGTACTCCCGTCTGGCAACTTTCCCCCTCATTACACCTCCAGCGACTCGGAAGTTTCTCCCTCTGAGCACCCATTTCAAATTCTCGATTG AAAGATTTGCTTCCTCTATCTCACCGAGTCATGTCTCCGCTTCAAAGGCGGCAAAGCCATCGGCGTCGGACCCAGCGAGGTCTGTTCGGACGGTTCTCTT CGTTCCCCCGGGAGTTGAGCTGGAGGAGGTGAGGGAGGACATGATTTTATCCGGTTCGAACATCGTAGTCGGACCATATGCGGGTCATTCGCAGATAAAG GAAGTGGAGTTCGTGAAGAGCAGTGCGCGGGCAAAGGATTGCCCCAAAGATGATAAACCCGAGTTCGCCATTCTGGGGAGGTCCAATGTTGGAAAGTCAT CGCTAATCAATTCTTTGGTTCGGAAGAAAGAAATTGCTCTTACATCTAAAAAGCCAGGGAAGACTCAGTTGATCAATCATTTCTTGGTTAACAAAAGTTG GTACCTTGTTGATTTGCCTGGTTACGGGTTCGCCAAAGCATCAGATGCAGCTAGAATGGATTGGTCTGGATTCACAAAAGGATACTTTCTGAACAGAGAG AGTCTGGTTGGTGTGCTACTCCTAATTGATGCAAGCGTTCCTCCTCAAAAGATAGACCTGGACTGCGCAAATTGGCTTGGACGAAACAAAATACCATTAA CTTTTGTTTTAACCAAGTGTGATAAGGTGAAAGGCGGGAAAGGAACGAGGCCAGAAGAGAACATCAGTAATTTCCAGGAGTGGATAGATGAGAGTTACAG ACAGCAACAACTACCTTGGATCATGACTAGTAGTGTCACCGGGTTAGGAAGGGATGAGCTTCTCTTGCATATGTCACAACTCAGAAACTACTGGGATCAG TAA
AA sequence Show only first row Show all	>Lus10039653 pacid=23165138 polypeptide=Lus10039653 locus=Lus10039653.g ID=Lus10039653.BGIv1.0 annot-version=v1.0 MLLRYSRLATFPLITPPATRKFLPLSTHFKFSIERFASSISPSHVSASKAAKPSASDPARSVRTVLFVPPGVELEEVREDMILSGSNIVVGPYAGHSQIK EVEFVKSSARAKDCPKDDKPEFAILGRSNVGKSSLINSLVRKKEIALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKASDAARMDWSGFTKGYFLNRE SLVGVLLLIDASVPPQKIDLDCANWLGRNKIPLTFVLTKCDKVKGGKGTRPEENISNFQEWIDESYRQQQLPWIMTSSVTGLGRDELLLHMSQLRNYWDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10039653 [exp]	0	1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10042822 [exp]	11.8	0.8857
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10027685 [exp]	12.0	0.8667
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	13.9	0.8795
AT4G02725			unknown protein		Lus10006915 [exp]	18.4	0.8802
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	18.9	0.7879
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10007772 [exp]	20.7	0.8366
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	23.2	0.8802
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	26.8	0.8636
AT2G21385			unknown protein		Lus10028792 [exp]	30.4	0.8695
AT4G24750			Rhodanese/Cell cycle control p...		Lus10043306 [exp]	30.5	0.8727

Compare expression of checked genes

Lus10039653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.