Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22880 41 / 0.0001 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011555 [exp] 51 / 7e-08 AT4G37710 47 / 2e-07 VQ motif-containing protein (.1) Lus10019270 [exp] 51 / 8e-08 AT4G37710 47 / 4e-07 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006400 [exp] 40 / 0.0005 AT4G37710 / VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10039654 pacid=23165323 polypeptide=Lus10039654 locus=Lus10039654.g ID=Lus10039654.BGIv1.0 annot-version=v1.0 ATGGAAGCCGCCACCTACTCATCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCATCTTCAACATCAACCATCTACTTCTCAGCTACAACCAAAACTACCG ATTATCAGAAACCCTTCTATTCGTCGCTACACTCGATTCAGGGTACTAGAAGTGATCACAAGCTTAATAAGCAGCAGCTGGGGAATTATAATAAGCCCTG TTTCAACAAGAAGCTACACATCGCCCCGTTGCCACCAAACCGGTCACCAAAAGTCTACAAAGTCCATCCAATCAACTTCAAGGAACTCGTCCAGAGCCTC ACCAGTCATCCGCGGAGGATCCAGAACTTGGCTCCACCCCCGCTTCATCTTCTACTTGATAGACAGCAACAACAGCCACCTCCACCACCACCGCCGCCGC TTCAGCAATTGCTTCCTCCTCCAACTCATCATTCAACTAGAAGCGTAGACACCGACGGAGAAGAAGAAGATGGTCAACTAACGGAGGAGTCGCCGTTTTC CGCACTGTATCGGGAGCTGATGACAACCGAACCATCAGCCGCTAATACATCAGACGGGAACATGGATAATTATATTTATAATAATATTGTGACGACGGAG AGTGTGATAACTTCACCATCGACATCATTGGACCTGAATCTGGGGTCGCCAAATGCACAACACTCATGTTGGTATTCTCCGCTGTTCAGCCCTGCTACTG CCGGCAACTTAATTGCCACTCTGGATCATCCCCAACGAACCATTCTCTAG
AA sequence Show only first row Show all	>Lus10039654 pacid=23165323 polypeptide=Lus10039654 locus=Lus10039654.g ID=Lus10039654.BGIv1.0 annot-version=v1.0 MEAATYSSSSSSSSSSNSSSTSTIYFSATTKTTDYQKPFYSSLHSIQGTRSDHKLNKQQLGNYNKPCFNKKLHIAPLPPNRSPKVYKVHPINFKELVQSL TSHPRRIQNLAPPPLHLLLDRQQQQPPPPPPPPLQQLLPPPTHHSTRSVDTDGEEEDGQLTEESPFSALYRELMTTEPSAANTSDGNMDNYIYNNIVTTE SVITSPSTSLDLNLGSPNAQHSCWYSPLFSPATAGNLIATLDHPQRTIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039654 [exp]	0	1
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	1.4	0.7944
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	2.2	0.7984
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	6.2	0.7926
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10016598 [exp]	6.3	0.7087
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	8.7	0.7757
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	11.5	0.7700
					Lus10023285 [exp]	12.2	0.7610
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	15.0	0.7245
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	17.9	0.7488
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	25.8	0.7406

Compare expression of checked genes

Lus10039654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.