Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05630 179 / 1e-58 ATG8D Ubiquitin-like superfamily protein (.1.2) AT1G62040 178 / 9e-58 ATG8C autophagy 8c, Ubiquitin-like superfamily protein (.1.2) AT4G21980 171 / 4e-55 ATG8A, APG8A AUTOPHAGY-RELATED 8A, AUTOPHAGY 8A, Ubiquitin-like superfamily protein (.1.2) AT4G04620 169 / 2e-54 ATG8B autophagy 8b, Ubiquitin-like superfamily protein (.1.2) AT3G60640 164 / 2e-52 ATG8G AUTOPHAGY 8G, Ubiquitin-like superfamily protein (.1) AT4G16520 162 / 7e-52 ATG8F autophagy 8f, Ubiquitin-like superfamily protein (.1.2) AT2G45170 160 / 7e-51 ATATG8E AUTOPHAGY 8E (.1.2) AT3G15580 126 / 1e-37 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) AT3G06420 123 / 3e-36 ATG8H autophagy 8h, Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027186 [exp] 192 / 2e-63 AT2G05630 222 / 1e-76 Ubiquitin-like superfamily protein (.1.2) Lus10015563 [exp] 177 / 2e-57 AT1G62040 230 / 1e-79 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Lus10004352 [exp] 165 / 1e-52 AT2G45170 203 / 1e-68 AUTOPHAGY 8E (.1.2) Lus10028933 [exp] 164 / 2e-52 AT4G16520 215 / 6e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10008507 [exp] 163 / 5e-52 AT4G16520 216 / 3e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10000733 [exp] 162 / 1e-51 AT4G16520 217 / 1e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10038046 [exp] 130 / 5e-39 AT3G15580 199 / 1e-67 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Lus10009987 [exp] 119 / 6e-31 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228800 [exp] 185 / 1e-60 AT2G05630 224 / 1e-77 Ubiquitin-like superfamily protein (.1.2) Potri.014G153800 [exp] 184 / 2e-60 AT2G05630 202 / 6e-69 Ubiquitin-like superfamily protein (.1.2) Potri.004G013700 [exp] 176 / 6e-57 AT1G62040 216 / 3e-74 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Potri.011G004300 [exp] 172 / 3e-55 AT4G21980 219 / 1e-74 AUTOPHAGY-RELATED 8A, AUTOPHAGY 8A, Ubiquitin-like superfamily protein (.1.2) Potri.002G144600 [exp] 166 / 2e-53 AT3G60640 192 / 8e-65 AUTOPHAGY 8G, Ubiquitin-like superfamily protein (.1) Potri.003G110901 [exp] 166 / 3e-53 AT4G16520 197 / 1e-66 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.008G136040 [exp] 166 / 3e-53 AT4G16520 197 / 1e-66 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.001G122700 [exp] 166 / 4e-53 AT4G16520 191 / 2e-64 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.014G060300 [exp] 159 / 2e-50 AT4G16520 214 / 1e-73 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.008G099400 [exp] 132 / 7e-40 AT3G15580 187 / 7e-63 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02991 [flax] [poplar] Atg8 Autophagy protein Atg8 ubiquitin like
Representative CDS sequence Show only first row Show all	>Lus10039656 pacid=23165130 polypeptide=Lus10039656 locus=Lus10039656.g ID=Lus10039656.BGIv1.0 annot-version=v1.0 ATGGTCCAGAGCTCCTTCAAGCTGGAACATCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATTAGGGAGAAATATCCAGACAGAATCCCAGTGATTG TTGAGAAGGCTGAAAAGAGTGACGTGCCCGACATTGACAAGAAGAAATACTTGGCTCCTGCTGATCTCACGGTTGGCCAATTCGTGTACGTGGTCCGGAA AAGGATCAAGCTGAGTCCCGAGAAAGCCATCTTCATTTTCGTCAAGAACATTCTACCTCCCACCGAGAGGAGGCAGGCTGAAGCTGCTCGCATTAGGGAA AAGTATCCCGGCAGGATCCCGGTTATTGTTGAGAGGGCTGAAAAGAGTGATGTGCCGGACATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTCACCG TGGGTCAGTTCGTCTATGTGGTTCGTAAGAGGATCAAGCTGACTCCCGAAAAGGCCATTTTCATTTTTGTCAAGAACATCTTACCACCCACCGCTGCTAT GATGGCCGCCATTTACGAAGAGAACAAGGACGAGGATGGCTTCCTTTACATGACCTACAGCGGGGAGAACACCTTTGGAAAAGACCTCTGA
AA sequence Show only first row Show all	>Lus10039656 pacid=23165130 polypeptide=Lus10039656 locus=Lus10039656.g ID=Lus10039656.BGIv1.0 annot-version=v1.0 MVQSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAEKSDVPDIDKKKYLAPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTERRQAEAARIRE KYPGRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLTPEKAIFIFVKNILPPTAAMMAAIYEENKDEDGFLYMTYSGENTFGKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	1.7	0.9222
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	3.9	0.9051
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	4.0	0.9113
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	4.5	0.8976
					Lus10015592 [exp]	5.9	0.8942
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	7.5	0.8687
AT4G08240			unknown protein		Lus10009881 [exp]	9.2	0.9033
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	10.2	0.8661
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	10.5	0.8442
					Lus10011965 [exp]	11.0	0.8625

Compare expression of checked genes

Lus10039656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.