Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 572 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 559 / 0 Galactosyltransferase family protein (.1) AT4G26940 528 / 0 Galactosyltransferase family protein (.1.2) AT1G11730 451 / 6e-158 Galactosyltransferase family protein (.1) AT1G32930 449 / 6e-157 Galactosyltransferase family protein (.1) AT1G77810 430 / 1e-149 Galactosyltransferase family protein (.1.2) AT1G33430 405 / 9e-140 Galactosyltransferase family protein (.1.2) AT1G22015 397 / 2e-136 DD46 Galactosyltransferase family protein (.1) AT5G53340 218 / 3e-67 Galactosyltransferase family protein (.1.2) AT4G32120 190 / 1e-56 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027185 [exp] 779 / 0 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 602 / 0 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 589 / 0 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 538 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 534 / 0 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 454 / 1e-158 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 452 / 7e-158 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 452 / 7e-158 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10008282 [exp] 450 / 4e-157 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228900 [exp] 627 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 623 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 469 / 1e-164 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 464 / 1e-162 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 457 / 5e-160 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 451 / 7e-158 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 444 / 8e-155 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 434 / 5e-151 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 407 / 6e-140 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 223 / 3e-69 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039657 pacid=23165200 polypeptide=Lus10039657 locus=Lus10039657.g ID=Lus10039657.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAGTCAAGAACAGAGCAGCAATTCCTCCCCAAACATGGAAACTTCTCATCTGCTGTGCCTCAGAAATGGACAGTTTTCCTCTGCTTAGTCT GTTTCTGCTCAGGATTGCTCTTCACCAACAGGATGTGGTCAGTTCATGAGCCTAAAAGTGGTCTAACAAGGACCACTGCAGTTGAAGCTGAGAAGCTCAA GTTGATCTCTGAGGGTTGTGGCTCGATTATAACCTTGCATCAGAAGGATGTGAGGCCGGACTCGAAGGACATCAGTAGAACGATAGATAAGACGATTTCG AGCTTAGAGATGGAGCTTGCTGCTGCAAAGGCAGCTCAGGAATCGTTGCTCACCGGCTCTCCTCGTTCGGAGGATGAATCGAAGAAAGGTTCGCCTTTGA GAAAGAAGAGGAAGTACTTGATGGTGGTGGGAATCAATACTGCATTTAGCAGCAGGAAGAGGAGAGATTCGGTTCGTGACACGTGGATGCCTCAAGGTGA AAAGAGGAAGAAACTGGAAGAAGAGAAGGGTATCATTATTCGATTCGTTATCGGTCACAGTGCCACATCAGGTGGAATTTTGGACAGAGCAATTGAGGCA GAAGATAGAAGGCATGGAGATTTCTTGAGGCTGGATCATGTCGAAGGATACCTCGAATTATCAGCAAAGACAAAGATCTACTTCGCTACAGCTATTTCCA CGTGGGACGCGGATTTCTATGTCAAAGTTGACGACGATGTTCATGTTAATCTAGCTACACTTGGAGAAACAATGGTTAGGCACAGAAAGAAACCAAGAGT ATACATAGGATGCATGAAATCTGGTCCTGTTCTTAACCAAAAGGGAGTGAGATATCATGAGCCGGAGTACTGGAAATTCGGCGAGGCAGGAAACAAGTAC TTCCGTCATGCCACGGGACAGCTCTACGCAATCTCGCACGATTTAGCTTCGTACATTTCGTTAAACCAGTATGTCTCTCTCCGTTCATTACAATATGAGC ATTTGAATAAAAATGTCTGCTTCAAAACTGACATGAGACCACCTTTTATCAGACACGTCCTCCACAAGTTTGCTAACGAGGATGTCTCGTTGGGATCGTG GTTCATCGGCCTCGATTTAGACCATATCGACGATCGTAGACTATGCTGTGGAACTTCAGATTGTGAGTGGAAGGCTCAAGCTGGCAACGCCTGCGTTGCT TCGTTCGACTGGAGCTGCAGCGGGATATGTAGATCGTCGGATCGGATTAAGGATGTCCACCGACGGTGTGGGGAAAACCCGAATGCTGTATGGAATGCAA CATTCTTCTAA
AA sequence Show only first row Show all	>Lus10039657 pacid=23165200 polypeptide=Lus10039657 locus=Lus10039657.g ID=Lus10039657.BGIv1.0 annot-version=v1.0 MSFKSRTEQQFLPKHGNFSSAVPQKWTVFLCLVCFCSGLLFTNRMWSVHEPKSGLTRTTAVEAEKLKLISEGCGSIITLHQKDVRPDSKDISRTIDKTIS SLEMELAAAKAAQESLLTGSPRSEDESKKGSPLRKKRKYLMVVGINTAFSSRKRRDSVRDTWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEA EDRRHGDFLRLDHVEGYLELSAKTKIYFATAISTWDADFYVKVDDDVHVNLATLGETMVRHRKKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNKY FRHATGQLYAISHDLASYISLNQYVSLRSLQYEHLNKNVCFKTDMRPPFIRHVLHKFANEDVSLGSWFIGLDLDHIDDRRLCCGTSDCEWKAQAGNACVA SFDWSCSGICRSSDRIKDVHRRCGENPNAVWNATFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	0	1
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	3.2	0.8583
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	4.5	0.8234
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	4.5	0.8252
AT1G68110			ENTH/ANTH/VHS superfamily prot...		Lus10034431 [exp]	5.3	0.8163
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	5.5	0.8175
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	6.2	0.8360
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	6.9	0.8155
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	8.9	0.8384
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	13.0	0.7922
AT2G38430			unknown protein		Lus10003276 [exp]	13.9	0.8042

Compare expression of checked genes

Lus10039657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.