Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21740 385 / 3e-134 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) AT5G57930 220 / 3e-68 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 198 / 5e-60 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 167 / 1e-48 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027182 [exp] 496 / 6e-179 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10019959 [exp] 208 / 2e-63 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 204 / 5e-62 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 201 / 4e-61 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 174 / 8e-51 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 173 / 1e-50 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 163 / 7e-47 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 166 / 7e-46 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10041934 [exp] 103 / 6e-27 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037200 [exp] 416 / 2e-146 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Potri.006G183900 [exp] 217 / 6e-67 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 214 / 3e-66 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 209 / 5e-64 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 173 / 2e-50 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10039659 pacid=23165121 polypeptide=Lus10039659 locus=Lus10039659.g ID=Lus10039659.BGIv1.0 annot-version=v1.0 ATGATGGTGTATTCACGAATGGCTTCTGTGAGGAAGACCCCGTGGGGGAATGCTGTCGTGGGAGATTCCAATGGTTACATTGGATGGTGCAGGTTTTACA GAGCAAGAGAGGTGGACTGGCGGAAGCTGAGGTCTATGATTATAAAGAGAGTTGAGGATCGAGCAGGGGAGTATCCTGTGAAGGCAATGGTACCTGTAGC AGAAGAGGTGCTTAACGCTAGGATGAGGGTTATCCGTGGCGTATCTGCTTTGGTGAAATCCGTCCCTGTCGTTGCTTGCAAGTTCTGTCCTGAAGTGTTT GTTGGAGGGGAAGGTCATTTGATTGAGACTTGTAAAGGGTACAAGCGCATTGGGAAGAAACGAATTCACGAATGGATACCCGGTACCTCGAACGATGTTT TCGTCCCAGTAGAGTCGTTTCACCTCCCCGACATGTCTCCGAAGGTTATTAAACACAACCAAAGGTTCGATTTTGATCGTGTTCCTGCTGTTGTCGAGCT GTGCTGGCAGGCTGGCGCCGAATCAAACGATCACGGCCCACTCAATGTCGAATCTGTCGAGTCTGAGCCACATGATGATCTGAAGTTTATTGCTAATAGA ACTATGAAGGCATGGGATGTACTTAGGTCAGGTGTAGAGAAATTGTTGCTGACTTATCCTGCTAAAGTCTGCAAACATTGCTCCGAAGTCCATGTTGGTC CTTCAGGACATAAAGCTCGGCTCTGTGGGGTGTTCAAATATGAGTCTTGGAGGGGGACGCATTTCTGGCAGAAGGCTGGTGTTGATGACTTGGTTCCTCC GAGAGTTGTGTGGAGCAGGCGGCCTCAGGATCCTCCTGCTCTGTCGAATGAAGGACGAGACTTCTATGGACACGCACCAGCAGTTGTCGATTTGTGTGCT AAAGCTGGTGCCCTTGTCCCAACCAAGTACTATTGCAGCATGAAGATTCAGGGCTTGTCTCCCGTTTCTCGATCAGCGTTGAACAAGATTGACAATTGA
AA sequence Show only first row Show all	>Lus10039659 pacid=23165121 polypeptide=Lus10039659 locus=Lus10039659.g ID=Lus10039659.BGIv1.0 annot-version=v1.0 MMVYSRMASVRKTPWGNAVVGDSNGYIGWCRFYRAREVDWRKLRSMIIKRVEDRAGEYPVKAMVPVAEEVLNARMRVIRGVSALVKSVPVVACKFCPEVF VGGEGHLIETCKGYKRIGKKRIHEWIPGTSNDVFVPVESFHLPDMSPKVIKHNQRFDFDRVPAVVELCWQAGAESNDHGPLNVESVESEPHDDLKFIANR TMKAWDVLRSGVEKLLLTYPAKVCKHCSEVHVGPSGHKARLCGVFKYESWRGTHFWQKAGVDDLVPPRVVWSRRPQDPPALSNEGRDFYGHAPAVVDLCA KAGALVPTKYYCSMKIQGLSPVSRSALNKIDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	0	1
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	2.8	0.8700
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	3.5	0.8622
AT5G07330			unknown protein		Lus10018040 [exp]	3.9	0.8729
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	5.0	0.8605
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	6.6	0.8233
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030139 [exp]	9.2	0.8237
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	9.5	0.8199
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	10.5	0.8672
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10000013 [exp]	11.8	0.8158
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	11.8	0.8587

Compare expression of checked genes

Lus10039659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.