Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 213 / 7e-72 ATBTF3 basic transcription factor 3 (.1) AT1G73230 200 / 1e-66 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031551 [exp] 237 / 2e-81 AT1G17880 255 / 2e-88 basic transcription factor 3 (.1) Lus10015123 [exp] 236 / 4e-81 AT1G17880 253 / 1e-87 basic transcription factor 3 (.1) Lus10027180 [exp] 214 / 3e-72 AT1G17880 238 / 1e-81 basic transcription factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078300 [exp] 226 / 7e-77 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.017G141100 [exp] 222 / 2e-75 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1) Potri.015G029800 [exp] 184 / 3e-60 AT1G17880 232 / 4e-79 basic transcription factor 3 (.1) Potri.012G037900 [exp] 182 / 9e-60 AT1G73230 225 / 1e-76 Nascent polypeptide-associated complex NAC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10039661 pacid=23165202 polypeptide=Lus10039661 locus=Lus10039661.g ID=Lus10039661.BGIv1.0 annot-version=v1.0 ATGAATCGGGAGAGGCTGATGAAGATGGCCGGTTCTGTTCGCACCGGCGGGAAGGGAACCGTACGCAGAAAGAAGAAGGCGGTGCACAAATCGACCACCA CAGACGACAAGAAGCTTCAGGGCACACTGAAGAGGATTGGAGTCAACACTATCCCCGCCATTGAGGAGGTCAACATCTTCAAGGATGATTTGGTGATTCA GTTTGTTAACCCGAAAGTTCAGGCTTCAATTGCTGCCAACACTTGGGTCATCACTGGTTCTCCTCAAACCAGAAAGTTGCAAGATATTCTTCCAGGAATC ATCAACCAGCTTGGACCCGATAACTTGGACAACCTGAAGAAGTTGGCTGAGCAGTTCCAGAAGGAGGCTCCAGCTGGTGGTGCAATCCAAGAAGAAGACG ATGATGATGTACCGGAGCTTGTAGCTGGGGAGACATTTGAAGCAGCAGCTGCGGAAGAGACTCGTGCTTAA
AA sequence Show only first row Show all	>Lus10039661 pacid=23165202 polypeptide=Lus10039661 locus=Lus10039661.g ID=Lus10039661.BGIv1.0 annot-version=v1.0 MNRERLMKMAGSVRTGGKGTVRRKKKAVHKSTTTDDKKLQGTLKRIGVNTIPAIEEVNIFKDDLVIQFVNPKVQASIAANTWVITGSPQTRKLQDILPGI INQLGPDNLDNLKKLAEQFQKEAPAGGAIQEEDDDDVPELVAGETFEAAAAEETRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	0	1
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	4.1	0.8136
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	6.6	0.7868
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	7.7	0.8302
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	7.7	0.8153
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	9.4	0.8432
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	14.1	0.8105
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	15.0	0.8153
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	15.0	0.8195
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	17.0	0.8065
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	18.4	0.8347

Compare expression of checked genes

Lus10039661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.