Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027179 [exp] 304 / 1e-106 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 200 / 1e-65 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 142 / 1e-42 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 129 / 1e-37 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 118 / 2e-33 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 117 / 7e-33 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 103 / 5e-27 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039663 [exp] 92 / 3e-24 ND / Lus10039665 [exp] 89 / 1e-21 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 70 / 5e-15 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10039662 pacid=23165134 polypeptide=Lus10039662 locus=Lus10039662.g ID=Lus10039662.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAAAACAGAGCACCACCAGCAAAAAAACAGAGGAGCTTCCTCCTCCTCTGCTCAATCTCAACAGCAACCCTCCTTGCTGCCGTAATCATCA CCGGTGTAATCCTCGGACTCACAATCTACAAACCCAGAGACCCAACCGTAGTCCTCTTCCCAGTGGGCCTAAAAAACCTCTCTTTAACCGAGCTAATCAT CGCCAGAAACGTCACGACCAAGATGGTAATCCAGATCACCAACCGAAACAGAGCCCGCTTCAAGTTCCGCAACGCCACCAGCCTCGTCTTCTACGGCAGC AATAATCTGGTGGTGGGTGAGGTTCCGATTGTTGAAAACGAGATTTCGGCTAGGTCGACGGTGAACCTGACGACGGAGGCGGTGCTGATGGCGTCCGAGA TGAAGACGGCGGCGGTGGGGGATATTACGGCGGGGAAGGTGAATTTGACGTCGAAGGTGACTCTGTACGGGAAATCGAAATTGTTGGGGTTGAAGTTGAA GACGGCGGTGTACACGGAGTGTTATCTGACGGTGGTGGTGAACCGGACGTTTAGCGGGACGAGCTGGTGCTGGAGTAAGCTGAAGATAAACTGA
AA sequence Show only first row Show all	>Lus10039662 pacid=23165134 polypeptide=Lus10039662 locus=Lus10039662.g ID=Lus10039662.BGIv1.0 annot-version=v1.0 MEEKNRAPPAKKQRSFLLLCSISTATLLAAVIITGVILGLTIYKPRDPTVVLFPVGLKNLSLTELIIARNVTTKMVIQITNRNRARFKFRNATSLVFYGS NNLVVGEVPIVENEISARSTVNLTTEAVLMASEMKTAAVGDITAGKVNLTSKVTLYGKSKLLGLKLKTAVYTECYLTVVVNRTFSGTSWCWSKLKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	0	1
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	1.7	0.9828
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	5.3	0.9580
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	5.5	0.9618
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	5.6	0.9197
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	6.7	0.9593
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	7.4	0.9570
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	8.8	0.9509
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	9.5	0.9501
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	9.8	0.9502
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	10.0	0.9497

Compare expression of checked genes

Lus10039662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.