Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 56 / 9e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 45 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64065 44 / 1e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 39 / 0.0007 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027177 [exp] 340 / 3e-121 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 201 / 4e-65 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 177 / 7e-56 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 132 / 1e-38 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 126 / 1e-36 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 126 / 1e-36 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 124 / 1e-35 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 120 / 3e-34 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 108 / 2e-29 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 109 / 3e-30 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 88 / 7e-22 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 57 / 4e-10 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 52 / 4e-08 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10039664 pacid=23165141 polypeptide=Lus10039664 locus=Lus10039664.g ID=Lus10039664.BGIv1.0 annot-version=v1.0 ATGACCGTCCAAAGAAATTCCGCTCTCAGAATCTGTTGCATATCAGCGACGGTAGTAATCGCCGTCACTACAATCATCGTAATAACCTTAGCGTTCACGG TCTTCAAACCCCACGACCCGGAAGTGGTCCTCTACCCTGTCGGGCTAGCCAAAGTCCAGCTCGAGGACTTCATCACAAACGACACCGTCACGAGCGACAT GGTCATGAGCATCCGCAACGAAAACTACGCGAGCTTCGAGTTCCGGAACGCCACCAGCCACATCAAGTACGACGGGAAGCTCGTGGGCCGGGTTCCTGTC CTTGAAGGGGTGGTCCCGGCACGGTCCACGATGAACGTGACATCTCCGGCTGTGTTGAGGGCCAAGAGGCTGAGGGATGACCCTAAGGCGATTAGTGATA TCATCGACGGAATGTTGAACCTTACCGCGACGGTTACCATGCATGGGAAGATGAAGATGGTTAAGGGTTTGGTTAAGAGGAGAGGTTCGGTTTATATCGA GTGTCACATGACGATTTACGTGGGTGAGACCCCGATTCGTGGCGATTCGTGGTGCTGGACTAAGCTCGAGATGTGA
AA sequence Show only first row Show all	>Lus10039664 pacid=23165141 polypeptide=Lus10039664 locus=Lus10039664.g ID=Lus10039664.BGIv1.0 annot-version=v1.0 MTVQRNSALRICCISATVVIAVTTIIVITLAFTVFKPHDPEVVLYPVGLAKVQLEDFITNDTVTSDMVMSIRNENYASFEFRNATSHIKYDGKLVGRVPV LEGVVPARSTMNVTSPAVLRAKRLRDDPKAISDIIDGMLNLTATVTMHGKMKMVKGLVKRRGSVYIECHMTIYVGETPIRGDSWCWTKLEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	0	1
AT2G25010			Aminotransferase-like, plant m...		Lus10032693 [exp]	1.0	0.9017
AT5G27260			unknown protein		Lus10032874 [exp]	7.7	0.8421
					Lus10000529 [exp]	9.5	0.8421
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	10.4	0.7417
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	11.0	0.8421
AT4G27570			UDP-Glycosyltransferase superf...		Lus10027483 [exp]	11.3	0.7133
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	12.2	0.8421
					Lus10005514 [exp]	13.4	0.8421
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	14.5	0.8421
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	15.5	0.8421

Compare expression of checked genes

Lus10039664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.