Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031555 [exp] 105 / 3e-28 AT3G54200 39 / 0.001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031558 [exp] 98 / 5e-25 ND 42 / 1e-04 Lus10031556 [exp] 97 / 7e-25 AT4G23610 42 / 1e-04 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 94 / 6e-24 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 93 / 2e-23 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 84 / 4e-20 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 84 / 9e-20 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031557 [exp] 83 / 2e-19 ND / Lus10015120 [exp] 82 / 4e-19 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 66 / 2e-13 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 60 / 4e-11 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10039665 pacid=23165073 polypeptide=Lus10039665 locus=Lus10039665.g ID=Lus10039665.BGIv1.0 annot-version=v1.0 ATGCTACCGCCGCCATCTCGCCGTGAACGGCTGAAACCATGCCATGTCGTCATAGCAATAGTCCTACTCGTCCTCCTCGTTACCGCGGCCACCGTCCTAA CGTTGTGGCTCACAGTTTTCCGGCCACGAGACCCGACCGTGACAGTCGACCTAGTCGGGCTTCGGGACATCCAGCTGAAGGACATCGCCTACGGCCCTAG GAATCTCACGACAAGCATCGTCATCGGCGTTGTCAACAACAACTACGGGAGCTTCGCGTGGAGGGAGTTCACGGCGTCAGTCAAATATAACGGAGATGAC GTCGGGGTGGTCCCGTTAGCTGACACCGTCGTGCCGAGACGGTCGAACGTGAACATAACGGCTTCCGTTATCTTACGGTTAGATAAGTTGGGGGCCGGAG GAGATGGGCATGTGGCGGAGGAGGTGCTTGAGGATTTGGGCGGTGGAGGTTTGAACTTGACTTGCTCGGTGACCGTGTTCGGGAAGATTAAGGTTGTCAG GGTTTGGCCGGAAGTGAGCGGGTCGGTTTACGTCGAGTGTTTCAGTTCTGTGTTTTTCAATCGTAATGCTACAGCTGAGAATTCGGGTCTTTTCTTTGGT CGGACTTCGTGTTGGACTAAGCTAAAGTGA
AA sequence Show only first row Show all	>Lus10039665 pacid=23165073 polypeptide=Lus10039665 locus=Lus10039665.g ID=Lus10039665.BGIv1.0 annot-version=v1.0 MLPPPSRRERLKPCHVVIAIVLLVLLVTAATVLTLWLTVFRPRDPTVTVDLVGLRDIQLKDIAYGPRNLTTSIVIGVVNNNYGSFAWREFTASVKYNGDD VGVVPLADTVVPRRSNVNITASVILRLDKLGAGGDGHVAEEVLEDLGGGGLNLTCSVTVFGKIKVVRVWPEVSGSVYVECFSSVFFNRNATAENSGLFFG RTSCWTKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	0	1
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	4.5	0.8445
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	4.8	0.8660
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	4.8	0.8052
					Lus10005203 [exp]	5.1	0.7635
					Lus10011594 [exp]	6.8	0.8660
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	6.9	0.7919
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	8.3	0.8660
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	9.6	0.8660
					Lus10002099 [exp]	10.7	0.8660
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	11.7	0.8660

Compare expression of checked genes

Lus10039665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.