Plant FIBer expression Database

Lus10039666 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21710 51 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027176
[exp]
216 / 3e-72 AT3G21710 71 / 2e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G151900
[exp]
65 / 3e-13 AT3G21710 110 / 2e-30 unknown protein
Potri.002G230300
[exp]
61 / 8e-12 AT3G21710 98 / 1e-25 unknown protein
Potri.001G419400
[exp]
51 / 4e-08 AT3G21710 70 / 1e-14 unknown protein
Potri.011G135700
[exp]
49 / 2e-07 AT3G21710 76 / 4e-17 unknown protein
PFAM info
Representative CDS sequence
>Lus10039666 pacid=23165335 polypeptide=Lus10039666 locus=Lus10039666.g ID=Lus10039666.BGIv1.0 annot-version=v1.0
ATGGATGGACAAGAGGAGAGTGGTTGGACTGGCTACTTTGAAGACTTTTGTCATGAAGAAGATGATGATGATCAACAAGCATCCATGAGCTTGTGTAGCT
CTTCCATGGTCTCTGATGCTTCTTCTCTTCCTGCAAGGAACATTAATGGCGGCATCAATTCATCTCTTCCTCTTCATCAACAACAACAACATCATCACAT
TCTTTACAGTCAAAATTCAGTCCCAAAGAAGCTCAATTTCAACAAGAAGAGGAATACACATCACATGGTCTCCAACTACCACAATGATGATTCCCTTGAA
GACACTGCTAGCTCTCCTGTTAACAGCCCCAAGGTTGTTGATTTCAGGCATATGGAGATGAACTCTAAGATGATGATGGCAACAAGTGGTAATTACAATA
CTAGTCACATTGGTCCTTTCAGCAGCACATCCACTTCTATGGGGAATAGTATTAAGGAGGAGGAAGAGTGCACAGAGCTGAAGAAGAAAGGGCTTTGCTT
AGTTCCTATGTCCATACTTCTTCATTATGCTGGCTAA
AA sequence
>Lus10039666 pacid=23165335 polypeptide=Lus10039666 locus=Lus10039666.g ID=Lus10039666.BGIv1.0 annot-version=v1.0
MDGQEESGWTGYFEDFCHEEDDDDQQASMSLCSSSMVSDASSLPARNINGGINSSLPLHQQQQHHHILYSQNSVPKKLNFNKKRNTHHMVSNYHNDDSLE
DTASSPVNSPKVVDFRHMEMNSKMMMATSGNYNTSHIGPFSSTSTSMGNSIKEEEECTELKKKGLCLVPMSILLHYAG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21710 unknown protein Lus10039666
[exp]
0 1
AT5G14000 NAC ANAC084 NAC domain containing protein ... Lus10012557
[exp]
1.4 0.9557
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Lus10002419
[exp]
2.2 0.9561
AT2G02061 Nucleotide-diphospho-sugar tra... Lus10031330
[exp]
3.9 0.9402
AT2G33640 DHHC-type zinc finger family p... Lus10016036
[exp]
8.1 0.9306
AT1G52800 2-oxoglutarate (2OG) and Fe(II... Lus10008097
[exp]
9.4 0.9280
AT4G33360 FLDH farnesol dehydrogenase, NAD(P)... Lus10041863
[exp]
9.5 0.9221
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Lus10041055
[exp]
9.6 0.9334
AT4G20140 GSO1 GASSHO1, Leucine-rich repeat t... Lus10027688
[exp]
9.9 0.9280
AT5G10720 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histi... Lus10020114
[exp]
10.8 0.9139
AT4G34770 SAUR-like auxin-responsive pro... Lus10007562
[exp]
12.5 0.9158

Lus10039666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.