Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05230 1097 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G04890 1065 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 1064 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G00730 725 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT2G32370 717 / 0 HD HDG3 homeodomain GLABROUS 3 (.1) AT3G61150 711 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G73360 629 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 605 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G46880 583 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) AT5G52170 569 / 0 HD HDG7 homeodomain GLABROUS 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027175 [exp] 1409 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10006765 [exp] 1032 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 1032 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 1018 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10018359 [exp] 739 / 0 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10031321 [exp] 709 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 669 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 585 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 576 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152000 [exp] 1211 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 1207 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 1061 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 1038 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 783 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 779 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 700 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 687 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G139300 [exp] 649 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 647 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10039667 pacid=23165165 polypeptide=Lus10039667 locus=Lus10039667.g ID=Lus10039667.BGIv1.0 annot-version=v1.0 ATGCCAGCCGGAGTGATGGTTCCGGCGAGAAACATGGCATCATCGGCGGCGATTCTTAGGAGTAACGGCGGCACCGGCACCAGTAGTAGCTCTAGCGTTG TTGGCCTTGGCGGGTTCGGCTCATCCACCACTCTTCCTATTCTTGGCCAGCATGATGGACGACGTCGACGTGATAGGCGGCGGCGGCGGAGGNNNNNNNN NGGCGGAGGCCACCACCACCACCACCACCACCATCAGCTTCAGTATTTACACCTAGACATGATGACCCACCACGCCACGCCGGAGAGCAACGACTTCCCA GGCGGAGGAGAGTTCGACATAAGCGGCAACACAAAGTCCGGCGGGAGCGACAACCAAGACGGCGGAGGAGGATCTGGAGACGACCAGGAGCAGCAGCAGC AACCGCCGAACAAGAAGAAGCGGTACCACCGCCATACCCAGCACCAGATCCAAGAAATGGAAGCATTTTTCAAGGAATGTCCACACCCAGATGATAAGCA GAGGAAGGAGCTTAGCAGGGAGCTAGGGCTTGAGCCTTTGCAAGTCAAGTTCTGGTTCCAGAACAAACGCACCCAAATGAAGACTCAACATGAGAGGCTT GAGAACAATCAGCTGAGATCGGAGAACGACAAGCTAAGAGCCGACAACATAAGGTATCGAGAAGCCCTAACCAACACCTCCTGTCCGAACTGCGGTGGGC CCACCGCTGTCGGGGAGATGTCCTTCGACGAACACCATCTCAGGCTCGAGAATGCCCGACTTCGAGAGGAGATCGATCGGATATCGGCGATAGCTGCGAA GTATGTGGGGAAGCCGGTGGTGAACTTCCCACTTCTGTCATCACCGATGGCCCCACGTCCTGTCGAGCTAGGGGTCGGAAATTTTGGAGGTGGTGAACAT CAGCCAGCTGCCGCTGGAGGAGGAGGTGTGGATATGTATGGAGGTGGAGCGGGGGACTTGCTGAGGTCTATAAGCGGGCCTGCGGAGGCTGACAAGCCGA TCATAATCGAGCTAGCGGTTGCAACCATGGAAGAGGTGGTTAGGATGGCTCAAATGGGTGAGCCCTTGTGGATGGCGAATGGCTTGGATGGTTCTGACCC GGTTTTGAACGAGGATGAGTACGTTAGGACTTTCCCTCGTGGCATCGGACCCAAGCCTAACGGGTTCAAGTCGGAGGCCTCGAGGGAAACTGCCGTTGTT ATCATGAACCACGTCAACCTCGTTGAGTACCTCATGGACGTGAACCAGTGGGCTGGTTTGTTCTCCGGGATAGTGTCTAGGGCAATGACATTGGAAGTGT TGTCAACGGGAGTTGCGGGGAACTACAATGGTGCATTACAAGTGATGACTGCTGAACTCCAACTGCCGACTCCACTTGTCCCAACAAGAGAAAGCTACTT TGCGAGGTACTGTAAGCAACACCCCGACGGAACTTGGGCGGTGGTCGACGTTTCCTTGGACGACTTACGGCCGAGTCCGGTGGCAAGGTGCCGGAAGAGG CCTTCCGGTTGCTTGATTCAAGAAATGCCCAATGGTTACTCCAAGGTGACATGGATTGAACACGTGGAAGTGGACGACAGAGGGGTCCACAATCTCTACA AGCAGATCGTCAGCTCCGGCCACGCCTTCGGCGCGAAGCGGTGGGTGGCGACGCTAGACCGGCAGTGCGAGCGGCTGGCCAGCGCCATGGCTACAAACAT CCCTACTAACGACGTTGGGGTGATAACGAACCAAGAAGGGAGGAAGAGCATGATGAAGCTAGCCGAGAGGATGGTTGTCAGCTTCTGCGCCGGCGTCAGC GCCTCGACCGCTCACACGTGGACCACTCTCTCCGGTACCGGAGCTGATGACGTCCGTGTCATGACGCGGAAGAGCATCGACGATCCGGGTCGTCCTCCCG GTATCGTGCTTAGTGCTGCGACGTCGTTCTGGATCCCCGTGGCGCCCAAGCGGGTCTTTGACTTTCTCCGTGACGAAAACTCTCGTAACGAGTGGGATAT TTTGTCGAACGGAGGAGCTGTGCAAGAAATGGCGCACATAGCTAACGGCCGTGACACCGGCAACTGCGTCTCTCTTCTTCGCGTCAACAGTGCGAATTCG AGCCAGGGGAACATGCTGATACTGCAAGAGAGCTGCACGGATCAGACGGCGTCGTTCGTGATATATGCACCGGTGGACATAGTGGCGATGAACGTGGTGC TCAACGGTGGGGATCCGGATTATGTTGCTCTGCTTCCTTCAGGGTTCGCGATTCTTCCTGACGGCAACGCTGGTGGTGAAGCTGGAGGCGGCGGAGAAGT AGGAGCAGGAGGAGGAGGGTCGCTCCTGACTGTTGCATTTCAGATATTGGTAGATTCAGTTCCGACGGCGAAGCTATCTCTTGGATCAGTTGCTACTGTT AACAGTCTCATTGCTTGCACCGTTGAGAGGATCAAGGCTGCTCTGTCCTGCGAGAATGCCGCCTCTGCTAATCTTTGA
AA sequence Show only first row Show all	>Lus10039667 pacid=23165165 polypeptide=Lus10039667 locus=Lus10039667.g ID=Lus10039667.BGIv1.0 annot-version=v1.0 MPAGVMVPARNMASSAAILRSNGGTGTSSSSSVVGLGGFGSSTTLPILGQHDGRRRRDRRRRRRXXXGGGHHHHHHHHQLQYLHLDMMTHHATPESNDFP GGGEFDISGNTKSGGSDNQDGGGGSGDDQEQQQQPPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERL ENNQLRSENDKLRADNIRYREALTNTSCPNCGGPTAVGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNFPLLSSPMAPRPVELGVGNFGGGEH QPAAAGGGGVDMYGGGAGDLLRSISGPAEADKPIIIELAVATMEEVVRMAQMGEPLWMANGLDGSDPVLNEDEYVRTFPRGIGPKPNGFKSEASRETAVV IMNHVNLVEYLMDVNQWAGLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFARYCKQHPDGTWAVVDVSLDDLRPSPVARCRKR PSGCLIQEMPNGYSKVTWIEHVEVDDRGVHNLYKQIVSSGHAFGAKRWVATLDRQCERLASAMATNIPTNDVGVITNQEGRKSMMKLAERMVVSFCAGVS ASTAHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWIPVAPKRVFDFLRDENSRNEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANS SQGNMLILQESCTDQTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAGGEAGGGGEVGAGGGGSLLTVAFQILVDSVPTAKLSLGSVATV NSLIACTVERIKAALSCENAASANL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	0	1
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	1.4	0.9298
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	1.4	0.9332
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	3.5	0.9066
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	4.6	0.9042
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	5.5	0.9197
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	5.7	0.9180
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	6.0	0.8999
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	6.9	0.9014
					Lus10024122 [exp]	7.1	0.8855
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	7.3	0.8647

Compare expression of checked genes

Lus10039667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.