Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32380 167 / 2e-53 Transmembrane protein 97, predicted (.1) AT1G05210 154 / 2e-48 Transmembrane protein 97, predicted (.1) AT1G05220 137 / 8e-42 Transmembrane protein 97, predicted (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027174 [exp] 282 / 5e-99 AT2G32380 196 / 9e-65 Transmembrane protein 97, predicted (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G117800 [exp] 187 / 2e-61 AT2G32380 173 / 9e-56 Transmembrane protein 97, predicted (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039668 pacid=23165108 polypeptide=Lus10039668 locus=Lus10039668.g ID=Lus10039668.BGIv1.0 annot-version=v1.0 ATGGGCGCGTTCGTGAAGCTGGTGGATTTCCTGCTCTTCTTCGTCTTCCTCGTGATCGCTCTGGCCGCTCCTCTGCTCGACGCGCAGACGTGCCTCCCTC GCGCTTACTTCCCCGATGCGTTGGTCGATCTACATGAATGGTACGGCAAGGAGTTCGGTGACTATCTCACCGTCGAGAGGCCGCACTTCTTCGTCGGATT GGTCTGGCTGGAGCTCTTCTTCCAGTGGCCGCTCGCCATCCTCAACCTCTACGCGATCTTGGCCTCCAAGCCGTGGTTCAGCACCTCTTGCTTGATCTAC GGCGTCTCCCTCATCTCCACCATGGTTCCAATTTTATCAGAGATGGTGTTGTCCGAGAGAGCATCTGAGAAGCTGATCATGGTCTATGCCCCATTCCTCG GAGCTGGTGTGGTCGCAATGCTGCGAGGGTTCGTCCCGTACTCCGGGAAGAGCAGTTCCGGAGCCCCAAAGAGGCCAGCTTTCGGCAGGAAGAAGAGGGT TTGA
AA sequence Show only first row Show all	>Lus10039668 pacid=23165108 polypeptide=Lus10039668 locus=Lus10039668.g ID=Lus10039668.BGIv1.0 annot-version=v1.0 MGAFVKLVDFLLFFVFLVIALAAPLLDAQTCLPRAYFPDALVDLHEWYGKEFGDYLTVERPHFFVGLVWLELFFQWPLAILNLYAILASKPWFSTSCLIY GVSLISTMVPILSEMVLSERASEKLIMVYAPFLGAGVVAMLRGFVPYSGKSSSGAPKRPAFGRKKRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	0	1
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	2.8	0.9112
AT4G01400			unknown protein		Lus10030195 [exp]	4.2	0.9064
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	5.2	0.9018
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	5.3	0.9008
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	5.5	0.8741
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	6.0	0.8894
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	8.1	0.8835
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	8.5	0.8868
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	8.8	0.8878
AT3G28720			unknown protein		Lus10033020 [exp]	9.5	0.8850

Compare expression of checked genes

Lus10039668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.