Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05205 144 / 6e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027173 [exp] 175 / 7e-59 AT1G05205 149 / 8e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093501 [exp] 148 / 2e-48 AT1G05205 142 / 5e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039669 pacid=23165376 polypeptide=Lus10039669 locus=Lus10039669.g ID=Lus10039669.BGIv1.0 annot-version=v1.0 ATGAGCGAAACGAGGCCGGTGCCGAGGAGGGAGAGCCCATGGGGGACGCCGCAGGAAGAGCACCGGCAGCCCAAGGCTCATCGATGCAATGATCGAGATG AAGACGTTATTCAAGCTTGTTTCGAAGGAAACCCATTCAAGACGGTTCCTGGACCTTTCAAGCTCTTCTGGGAATGCATGCGCTCCAAACCAGGGGAGGA ACCAACAGCACCCTACACCTACCTGCAGATTGATCCTCCGACAAGAGAGGCGAAACTTGATTAA
AA sequence Show only first row Show all	>Lus10039669 pacid=23165376 polypeptide=Lus10039669 locus=Lus10039669.g ID=Lus10039669.BGIv1.0 annot-version=v1.0 MSETRPVPRRESPWGTPQEEHRQPKAHRCNDRDEDVIQACFEGNPFKTVPGPFKLFWECMRSKPGEEPTAPYTYLQIDPPTREAKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05205			unknown protein		Lus10039669 [exp]	0	1
AT5G53650			unknown protein		Lus10008848 [exp]	1.4	0.9250
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	1.7	0.9302
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	2.8	0.9179
AT3G05070			unknown protein		Lus10026367 [exp]	3.9	0.9061
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	4.2	0.9183
AT3G07910			unknown protein		Lus10039527 [exp]	4.2	0.8962
AT5G07960			unknown protein		Lus10021623 [exp]	4.2	0.9010
AT4G34270			TIP41-like family protein (.1)		Lus10026859 [exp]	6.0	0.8790
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10037823 [exp]	6.8	0.8674
AT1G51650			ATP synthase epsilon chain, mi...		Lus10035755 [exp]	7.1	0.8819

Compare expression of checked genes

Lus10039669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.