Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21700 313 / 2e-107 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT5G54840 253 / 4e-84 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT5G03530 74 / 9e-16 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT2G44610 68 / 2e-13 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT1G07410 67 / 6e-13 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT5G59150 66 / 1e-12 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT3G09900 64 / 6e-12 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT3G53610 64 / 7e-12 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G07410 63 / 9e-12 AtRABA5b RAB GTPase homolog A5B (.1) AT5G59840 63 / 1e-11 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027172 [exp] 451 / 6e-162 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10031559 [exp] 385 / 9e-136 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 379 / 2e-133 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10019615 [exp] 269 / 3e-90 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10040044 [exp] 269 / 3e-90 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10014409 [exp] 70 / 5e-14 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 68 / 2e-13 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10001026 [exp] 67 / 4e-13 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10021507 [exp] 67 / 4e-13 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152100 [exp] 348 / 7e-122 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.001G420700 [exp] 296 / 4e-101 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.011G136300 [exp] 294 / 3e-100 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.006G121400 [exp] 70 / 3e-14 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 69 / 7e-14 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.010G229600 [exp] 69 / 1e-13 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G135500 [exp] 67 / 3e-13 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 67 / 4e-13 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.014G150300 [exp] 67 / 7e-13 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.016G000400 [exp] 65 / 2e-12 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10039670 pacid=23165365 polypeptide=Lus10039670 locus=Lus10039670.g ID=Lus10039670.BGIv1.0 annot-version=v1.0 ATGGGCCGATCCAAGTCCAGCCCTCGCCGGAAAGCCCAATGCCCCCTCACGATCCTCCGCCGCTGCATTCTCCAGGGGTGGAACCGAATCCTCATTTGCT CCGTCGGAAAGCCGATCAAGTACAGAATTCTTTCCTACTCCGACGTTGGAACAACCTCATTGGCTCTTCCTTCCGCCGCCGCCACCGGAGAAATTCCGCC TCCGCCGCCGCAGCCTTTACCGGTGGCTCTCCGTAACAGCATCACCGGCGAGTCGGATTTGGTTTCTTTGAAGATTAGCCTCCTGGGTGATAGCCAGGTT GGGAAAACAAGCTTTTTGGCGAAGTACGTCGGCAGCGATGAGGCGGCGGCAGAAGAAGGAGGAGGAAAAGATGGGCTGAATTTGATGGACAAAGTATTGG AAATCGGAGGCGCACGGATTTCCTACAGTCTCTGGGAATTCGACGGCGGGGAGCAGTCACGGGAGCAGATTCCGGTAGCATGCAAGGATTCAGTGGCGAT TCTCATCATGTTCGATCTAACAAGTCGGGTCACTCTTAACGGAGTTATGAGATGGTATCAAGAAGCAAGGAAATGGAATCAGACAGCAATACCGATTTTG ATCGGGACGAAATTCGACGACTTCATACAGCTTCCCATTGATATGCAATGGACAATTGCGAGCCAGGCGAGGGCGATTGCAAAGGCGCTGAACGCGACAC TGTTCTTCTCCAGCGCGACATACAACATCAATGTGAACAAGATCTTCAAGTTCTTAACGGCCAAGCTCTTCGACCTGCCGTGGACGTTGGAGCGGAACCT TACGATTGGAGAGCCCATCATCGATTTCTGA
AA sequence Show only first row Show all	>Lus10039670 pacid=23165365 polypeptide=Lus10039670 locus=Lus10039670.g ID=Lus10039670.BGIv1.0 annot-version=v1.0 MGRSKSSPRRKAQCPLTILRRCILQGWNRILICSVGKPIKYRILSYSDVGTTSLALPSAAATGEIPPPPPQPLPVALRNSITGESDLVSLKISLLGDSQV GKTSFLAKYVGSDEAAAEEGGGKDGLNLMDKVLEIGGARISYSLWEFDGGEQSREQIPVACKDSVAILIMFDLTSRVTLNGVMRWYQEARKWNQTAIPIL IGTKFDDFIQLPIDMQWTIASQARAIAKALNATLFFSSATYNINVNKIFKFLTAKLFDLPWTLERNLTIGEPIIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	0	1
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	1.7	0.9100
AT5G16110			unknown protein		Lus10028474 [exp]	7.7	0.8607
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	8.7	0.8849
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	10.4	0.8726
AT4G21865			unknown protein		Lus10023724 [exp]	10.5	0.8495
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	11.2	0.8432
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	11.4	0.8828
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	16.2	0.8294
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	30.0	0.8243
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	33.8	0.8281

Compare expression of checked genes

Lus10039670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.