Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05200 1173 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 1101 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT1G42540 919 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 902 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 900 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT3G51480 887 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G32400 737 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G24720 459 / 1e-146 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29120 454 / 2e-144 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 450 / 3e-143 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027171 [exp] 1708 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 989 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 890 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10031560 [exp] 851 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10016031 [exp] 840 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10015118 [exp] 830 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039672 [exp] 829 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 820 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10026553 [exp] 808 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152200 [exp] 1315 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 1297 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G253800 [exp] 979 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 953 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 947 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 931 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102600 [exp] 880 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 857 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 512 / 3e-166 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 504 / 3e-163 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10039671 pacid=23165351 polypeptide=Lus10039671 locus=Lus10039671.g ID=Lus10039671.BGIv1.0 annot-version=v1.0 ATGGCAAGAAATCTGCTTCTGTTGCTGATTCTTGCCATTTCCGTGCTGCAAATATTACAAGTTTTGGTTCAGGCAGCAGTTGGGAATTCCACTGCTTCTT CAAGGCCAAAGATGGTGAACTTAGGAGCCCTTTTCACTTTTGATTCTGTGATTGGAAGAGCAGCCCAGCCAGCAATTGCAGCTGCAGTTGATGATGTCAA TTCTGATTCCACCATCCTGTCTGGTACGAAGTTGGAGATTATTTTCCATGATACAAATTGCAGTGGCTTCCTGGGAACTGTGGAAGCTTTGCAGCTGATG GAAAATGATGTGGTGGCAGTAATAGGACCACAATCCTCCGGCATAGCACATGTGATCTCCCATGTAGTGAATGAGCTTCAAGTTCCATTACTGTCGTTCG CAGCCACGGATCCGACACTTGCAGCACTCCAGTATCCTTATTTCCTGCGGACTACACAGAGTGACTACTTCCAGATGTATGCAATTGCTGATATGGTCTC ATACTTTGGCTGGAGGGAAGTCATTGCCATTTTTGTTGATGATGACTATGGCAGAGGTGGGGTTTCCGTGTTAGGCGATGCTTTGGCGAAGAAACGTGCC AAGATCTCGTACAAGGCAGCCATTTCGCCAGGGGGCGCCCGGAACTCGATCAAGGATACATTGGTTGAAGTGAACTTGATGGAGTCCAGGGTTTACATTG TTCATGTCAATCCTGATACAGGGCTTTCCATATTCTCAGAAGCCAAGAACCTTGGTATGATGTCCAAGAGCTATGTTTGGATCACCACTGACTGGCTCGC TTCCGTCTTGGACTCGAGGGTCCCCGCTGATCAAGATGATTCGGATACAATGAACCTTCTCCAAGGTGTGGTATCACTCAGACACCACACACCGGACACT GATATGAAGAAGAAGTTCATGTCTAGATGGAATGGTCTCAAGTACAAGAACCCGGGACCCGGTATGTTCAACTCCTATGCACTCTATGCTTACGATTCCG TATGGCTAGCTGCACAGGCCCTCGAATCTTTCCTAGCCAGCAATGGAACCGTGTCCTACTCCAACGATCCCAAGTTGAAAGACACGAACACGAGCACATT GCACTTGTCGTCCCTTCGGGTCTTCAACGAAGGCCAGCAGTACCTCCAGACACTACTGAAGACCAACTTCACCGGTCTTAGTGGTCACATTCGGTTCGAT CATGACAAGAACTTCATCCACCCAGCGTACGATGTCCTCAACATCGGAGGAAATTCGTTCCGCAGGGTGGGATACTGGTCGAACCACTCCGGTCTTTCCA TAGTTGATCCTGAGAATCTTTATAGTGGGAAGCCTGTGAATGCTTCTTCCACCATTAGTAGTAATGAACACCTCTACAGCATCATATGGCCAGGGGAAAC CTCCGAAACTCCGAGAGGTTGGGTGTTCCCCAACAATGGGAAGCCACTGAGGATTGCTGTTCCTGATAGAGTGAGTTACTTGTCTTTTGTTGCCAAGGAT AAGAACCCTCCTGGTGTTCGAGGATACTGCATTGATGTCTTTGAAGCTGCCATCAACTTGCTGCCATATCCTGTTCCAAGGACTTACATGTTGTATGGTG ATGACAAGAGAAACCCTTCTTACAACAACATTGTCAATGCAGTTGCCCTCAATGAATATGATGCAGCAGTTGGAGATGTGACAATAGTGACAAACAGAAC AAAGATTGTGGATTTCACTCAGCCATACATGGAATCAGGACTGGTTGTGGTAGCTCCAGTCAAGCAAGTTAAATCCAGTCCATGGGCTTTCCTCAAGCCA TTCACTATCCAGATGTGGTGTGTAACTGGTGCTTTCTTCCTCTTCGTCGGAGCTGTTGTCTGGATCCTCGAGCATCGAATCAACCACGAGTTCCGGGGAC CTCCGAGACAGCAACTCATCACCATTTTCTGGTTCAGCTTCTCCACCATGTTCTTCTCCCACAGGGAAAACACAGTTAGCACATTGGGGCGTCTGGTCCT GATCATATGGCTGTTTGTGGTCCTGATTATCAATTCGAGCTACACGGCCAGCTTGACATCCATCCTGACTGTTCAGCAGCTTTCATCGAGGATCGAAGGG ATCGACACGTTGATTGCCAGTACCGAACCTATAGGAGTTCAGGACGGGTCGTTTGCGTGGAACTACTTGGTTGATGAGCTCAACATTGCATCTTCCAGGC TGGTGACGCTGAAAAATCAGGAGGACTATACGGCGGCGCTTCTCAAAGGACCGAAAGGCGGAGGAGTAGCAGCGATTGTCGACGAGCTTCCGTACGTGGA GATGTTCTTGTCGAATGCGAACTGCCAGTTCAAGACCGTTGGGCAGGAGTTCACCAAGAGCGGCTGGGGATTTGCATTCCAGAGGGACTCTCCGTTAGCC GTCGACCTATCGACAGCGATCCTCCAGCTCTCGGAGAACGGCGACCTGCAGAAGATCCACAACAAGTGGCTCCTCCACAGCGAGTGCGCCGACCAGCTCA ACCCGATCGACGAGAATCGCCTCTCCCTCAGTAGCTTTTGGTTTTGGGGTCTTTCCCTGATCTCCGGCCTCCCCTGGGTATTCGCGCTTTTAATATCCTC CTGCCGCGTCTACGGACAGTTCAGCAGGTTCGCCCCCGGCCACGACGACGGCGGAGGAGGAGACGGAGACACGGAGGACATTCGGCCGGCGCCCGGGACG AGGCCGCGTCGGTCGCTGAGGACCACGAGCTTTAAGGACATAATTGACTTTGTAGATAAAAAGGAGGCGGAGATTAAGGAGATACTCAAGCGGAAGAACA GCCACCATCACGGCAGCAGCCCGAGCACCGACGGCCAGACTACCACCGCCGGCCAGACTAGCTCGCCGGCGTGA
AA sequence Show only first row Show all	>Lus10039671 pacid=23165351 polypeptide=Lus10039671 locus=Lus10039671.g ID=Lus10039671.BGIv1.0 annot-version=v1.0 MARNLLLLLILAISVLQILQVLVQAAVGNSTASSRPKMVNLGALFTFDSVIGRAAQPAIAAAVDDVNSDSTILSGTKLEIIFHDTNCSGFLGTVEALQLM ENDVVAVIGPQSSGIAHVISHVVNELQVPLLSFAATDPTLAALQYPYFLRTTQSDYFQMYAIADMVSYFGWREVIAIFVDDDYGRGGVSVLGDALAKKRA KISYKAAISPGGARNSIKDTLVEVNLMESRVYIVHVNPDTGLSIFSEAKNLGMMSKSYVWITTDWLASVLDSRVPADQDDSDTMNLLQGVVSLRHHTPDT DMKKKFMSRWNGLKYKNPGPGMFNSYALYAYDSVWLAAQALESFLASNGTVSYSNDPKLKDTNTSTLHLSSLRVFNEGQQYLQTLLKTNFTGLSGHIRFD HDKNFIHPAYDVLNIGGNSFRRVGYWSNHSGLSIVDPENLYSGKPVNASSTISSNEHLYSIIWPGETSETPRGWVFPNNGKPLRIAVPDRVSYLSFVAKD KNPPGVRGYCIDVFEAAINLLPYPVPRTYMLYGDDKRNPSYNNIVNAVALNEYDAAVGDVTIVTNRTKIVDFTQPYMESGLVVVAPVKQVKSSPWAFLKP FTIQMWCVTGAFFLFVGAVVWILEHRINHEFRGPPRQQLITIFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSRIEG IDTLIASTEPIGVQDGSFAWNYLVDELNIASSRLVTLKNQEDYTAALLKGPKGGGVAAIVDELPYVEMFLSNANCQFKTVGQEFTKSGWGFAFQRDSPLA VDLSTAILQLSENGDLQKIHNKWLLHSECADQLNPIDENRLSLSSFWFWGLSLISGLPWVFALLISSCRVYGQFSRFAPGHDDGGGGDGDTEDIRPAPGT RPRRSLRTTSFKDIIDFVDKKEAEIKEILKRKNSHHHGSSPSTDGQTTTAGQTSSPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	0	1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10027658 [exp]	1.0	0.8969
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	2.4	0.8868
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	2.4	0.8852
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	4.1	0.8471
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	4.5	0.8811
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	8.8	0.8620
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	10.1	0.8632
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10003203 [exp]	10.4	0.8108
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	12.1	0.8143
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	13.9	0.8488

Compare expression of checked genes

Lus10039671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.