Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32400 902 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT1G05200 810 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT1G42540 806 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 776 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT4G35290 763 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 761 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32390 739 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G29120 437 / 8e-139 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 433 / 2e-137 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 414 / 3e-130 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027170 [exp] 1667 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 1354 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 1330 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027171 [exp] 827 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 816 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 816 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 782 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026553 [exp] 723 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 713 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229900 [exp] 1126 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.005G253800 [exp] 838 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 823 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 810 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 809 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.014G152200 [exp] 782 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 773 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 761 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.018G013200 [exp] 488 / 4e-158 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 482 / 1e-155 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10039672 pacid=23165132 polypeptide=Lus10039672 locus=Lus10039672.g ID=Lus10039672.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCGTGTGTTAAAGCTGTAGTGTTTGTGTTCTTTGTTTATACCGAGTTCGTCTTCTGCCAACAAAGGCCTGAAGTAGTGAATATTGGCGCGG TGTTCATGTTTGAATCGGTTATTGGGAGAGCTGCAATGCCTGCTATAAATGCTGCAATAGCTGATGTTAATAAGGATAAGAGTGTTCTCAATGGTACACG GCTCAATGTGATGATGGAGGATTCTAATTGCAGTGTCTTCTTTGGCTCCGTTGTAGCTCTTCGAATGATAGAGAGACAAGTGGTGTCCCTGATAGGCCCC CTATCTTCCGGAATAGCTCATATGGTTTCTGAAGTTGCAAACGGTCTGCAAGTACCTCTTATATCATTCGCAGCTACTGATCCAACGCTCTCCGCCCTTC AGTTCCCTTACTTCGTACGGACCACACTAAGCGACTCGTACCAGATGGCTGCCTTAGCCGATCTGGTCGAGTTTCATGAATGGAAAGAGGTCATTGTCAT CTTCACAGACAATGATCACGGCAGAAATGGAGTATCCGCCATGGAAGATCAGCTTAACAAGAGAATGATTAGAATAGCTTACAAACTGCGGTTAAGAGCC CGGTTCAACGACAGTGATGTCATTGATGTCCTCAACAGTACCAAGCTACTTGGTCCTCGCATTTACATTGTTCATTCCTATCAAGATCCTGACTTGAGAA TCTTCAAAATGGCACAGGAGCTCGAAATGATGACTGCCAATTTCGTCTGGCTCGCGACCGATTGGTTGGCTACTACCTTGGACTCGTTCACTCCCTCACA CCGAAGATCATCGTTACTCAGTCTTGTTCAAGGGGTGGTTGGACTTCGCCAGCATACTCCCGAGTCGACTCGAAAGAAGGATTTCGTGTCTCGGTGGAAG GATATGCAAAGAAAGGGGCTGGTGAATACTGAGGTGAATGCCTATGGATTTCAGGCTTATGACACAGTTTGGCTACTTGCATATGCAATTGATAAGCTCA TTAATGGAAAAGCTAACAACTTTACCTTCTCTTCAAGAGATAGACTTCTTGATGATACACAGAAATTCCAGCTGGGACATCTTAAAGTTTTCAACGGTGG AGCTGACCTTCTGAAGATAATATTGCAGTCGGATTTCACTGGTTTGAGTGGCCGTGTTCGGTTTAATGCTGACCGGAACGTACTAGACCGTGGCTATGAA GTCGTTAATGTTAATAACATGTCTATTCATACAGTAGGCTACTGGACTAATACTTCGGGATTTTCACTTATACCTCCCGAGGATCATCAAAGCCATTCCA GGGTAAATATGAAGCTTGAGAATATCACCTGGCCAGGTGGGAAGACGGAGAAACCTCGTGGCTGGGTGATCGCTAACAACGAAAAGCCGTTGAGGATTGG AGTGCCTTACAGAACAAGTTTTCTTGATTTTGTTAGCGAAGTGCCTAATAGCCACAAAATTGAAGGATACTGTATAGATGTGTTCCTGGAAGCAACGAAA TTAGTACCATATGATGTTCCTTACACATTTGTTCCGTTCGGAGATGGCCATTCCAATCCCAACTACGACGACCTTGTAGGCCAAGTTGCAGCCAATGTGT ATGATGCAGCGGTCGGGGACATAGCGATTGTGACAAGCCGGACAAAGATGGTGGATTTCTCTCAGCCTTATGTGGCTACTGGCCTTGTGATTGTGGCTCC GGTTGAAAACTCGAGAGATAGTGCATGGGTATTTCTCAAGCCATTCACCTTGGAGATGTGGTGTGTTACTGCAGCTTCATTTCTTATCGTTGCAGTGGTG ATCTGGTTACTCGAGCATCGCGTGAACGATGATTTCAGAGGCCCTCCTAAACGCCAGCTCGTTACGATGCTCATGTTCAGCTTCTCAACTCTGTTCAAGA CGAATCAGGAAACTACAAGAAGTTCACTTGCAAAGATGGTCATGCTAGTATGGCTTTTCTTATTGATGGTGATAACTGCAAGCTACACGGCTAGTTTGAC TTCCATCCTAACAGTTGAGCAGCTTTTGTCGCCAATTACCGGAATCGAAAGTTTGGTCGCAAGTAACTTTCCGATCGGATACCAAGAAGGATCATTTGCT TATGATTATCTAACAGAATGTCTCCACATATCTACATCAAGGCTCAAACCTCTACGTAACGCTGAAGAGTACGAGGCAGCATTGAGGAAAGGGGCTAGTG ACGGAGGAGCTGCAGCAATCGTAGACGAGCTTCCATACGTAGAAGTGTTCCTTGCAAATCAAACGGATTTCGGAATCATCGGCCAAGCGTTCACCAGGGC TGGATGGGGCTTTGCCTTTCAGAAAGAGTCGCCTCTTGCCATCGACATTTCCACAGCAATCCTGAAGCTTTCGGAGAACGGAGAGCTTCAGAAGATTCAT GACAGGTGGTTCTGTAAGAAGGGATGCCCTGAAGAGCGAAAGAAAAAGGGCCAGTCAAACCAGCTCCGGCTGATTAGCTTCTGGGGTCTATATCTTCTGT GTGGCATTGTCACTCTAACTGCATTGCTAATATACATCATACGAATGATTCGCCAATTCGCCATTCACAAACATAGACAGAATGTTTCTCCTTTAGAAGT CTCGACAACCACTACCGGCTGTTTCCAGGTAGCCAACAACTTTTTCAACTTCATTGATGAGAAAGAACGAAGCCATCGCGATATCGTTTGA
AA sequence Show only first row Show all	>Lus10039672 pacid=23165132 polypeptide=Lus10039672 locus=Lus10039672.g ID=Lus10039672.BGIv1.0 annot-version=v1.0 MKLPCVKAVVFVFFVYTEFVFCQQRPEVVNIGAVFMFESVIGRAAMPAINAAIADVNKDKSVLNGTRLNVMMEDSNCSVFFGSVVALRMIERQVVSLIGP LSSGIAHMVSEVANGLQVPLISFAATDPTLSALQFPYFVRTTLSDSYQMAALADLVEFHEWKEVIVIFTDNDHGRNGVSAMEDQLNKRMIRIAYKLRLRA RFNDSDVIDVLNSTKLLGPRIYIVHSYQDPDLRIFKMAQELEMMTANFVWLATDWLATTLDSFTPSHRRSSLLSLVQGVVGLRQHTPESTRKKDFVSRWK DMQRKGLVNTEVNAYGFQAYDTVWLLAYAIDKLINGKANNFTFSSRDRLLDDTQKFQLGHLKVFNGGADLLKIILQSDFTGLSGRVRFNADRNVLDRGYE VVNVNNMSIHTVGYWTNTSGFSLIPPEDHQSHSRVNMKLENITWPGGKTEKPRGWVIANNEKPLRIGVPYRTSFLDFVSEVPNSHKIEGYCIDVFLEATK LVPYDVPYTFVPFGDGHSNPNYDDLVGQVAANVYDAAVGDIAIVTSRTKMVDFSQPYVATGLVIVAPVENSRDSAWVFLKPFTLEMWCVTAASFLIVAVV IWLLEHRVNDDFRGPPKRQLVTMLMFSFSTLFKTNQETTRSSLAKMVMLVWLFLLMVITASYTASLTSILTVEQLLSPITGIESLVASNFPIGYQEGSFA YDYLTECLHISTSRLKPLRNAEEYEAALRKGASDGGAAAIVDELPYVEVFLANQTDFGIIGQAFTRAGWGFAFQKESPLAIDISTAILKLSENGELQKIH DRWFCKKGCPEERKKKGQSNQLRLISFWGLYLLCGIVTLTALLIYIIRMIRQFAIHKHRQNVSPLEVSTTTTGCFQVANNFFNFIDEKERSHRDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	1.4	0.7537
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	6.5	0.7387
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	7.1	0.7551
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	7.7	0.7009
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	8.0	0.7291
AT3G04890			Uncharacterized conserved prot...		Lus10009193 [exp]	10.5	0.6784
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	17.0	0.7214
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10023938 [exp]	24.5	0.6914
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000227 [exp]	26.5	0.6478
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	30.7	0.7038

Compare expression of checked genes

Lus10039672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.