Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 597 / 0 MATE efflux family protein (.1) AT1G61890 520 / 0 MATE efflux family protein (.1) AT1G11670 512 / 2e-179 MATE efflux family protein (.1) AT4G21910 486 / 3e-169 MATE efflux family protein (.1.2.3.4) AT4G21903 446 / 2e-153 MATE efflux family protein (.1.2) AT5G38030 351 / 1e-116 MATE efflux family protein (.1) AT1G47530 350 / 4e-116 MATE efflux family protein (.1) AT1G12950 344 / 1e-113 RSH2 root hair specific 2 (.1) AT1G23300 340 / 7e-112 MATE efflux family protein (.1) AT3G26590 334 / 5e-110 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027169 [exp] 787 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 565 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 559 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 522 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 510 / 1e-178 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 344 / 5e-114 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 343 / 2e-113 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 341 / 4e-113 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 342 / 1e-112 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153100 [exp] 617 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 587 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 581 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 578 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 575 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 558 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 556 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 517 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 509 / 3e-178 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.002G055100 [exp] 347 / 6e-115 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10039673 pacid=23165093 polypeptide=Lus10039673 locus=Lus10039673.g ID=Lus10039673.BGIv1.0 annot-version=v1.0 ATGGCATCATCTCCAAACGGTGACCTCACACAGCCTTTGGTGGCGGAACCACTGCCGGCGACACCAAAATCCTCGTTGATGCCGGCACCGCCACCGCATC ACGGCAGCAATGAGCTGGAGAATGTCTTGTCGGACACGAGTATGCCGTTCGGAGATAGGTTAAAGAGGGCCACTTGCATCGAGTCGAAGCTCCTCTTCCA CCTCGCCGCCCCTGCCGTCATTGTCTACATGATTAACTACCTCATGTCCATGTCCACCCAAATCTTCGCCGGCCATTTGGGCAACCTCGAGCTCGCCGCC GCTTCCTTGGGTAACACCGGCATCCAAGTCTTCGCCTATGGTCTCATGTTGGGTATGGGAAGCGCGGTGGAGACACTATGCGGCCAAGCGTACGGAGCCC AAAAGTACAAAATGCTCGGAGTCTACCTCCAACGGTCGACCATCCTCCTAACCCTAACGGGCATCCTCCTCGCCCTCCTCTACATCTTCTCCAAACCAAT CCTAATCCTCTTAGGAGAATCCCCCGAAATCGCCTCCGCAGCCTCGATCTTCGTGTACGGCCTGATCCCGCAGATATTCGCGTACGCCGTCAACTTCCCC ATCCAGAAGTACCTCCAGGCGCAGAGCATCGTGGCCCCAAGCGCGTACATCTCAGTGTTCACGCTCGGGATCCACGTGGTCCTCAGCTACGTGGCGATCT ACAAGCTCGGGATGGGCCTGCTGGGCGCGTCGCTGGTGCTGAGCTTGTCGTGGTGGATCGTCGTGGCGGCGCAGTTTGTTATACTTGTGCTCATTGCTGG GTTGCTTCCCGACCCCGAACTCGCTCTTGACTCGCTTTCCGTTTGCATGACAATCTCCGGGTGGGTGTTCATGATCTCCGTCGGATTTAACGCCGCAGCA AGTGTGAGGGTTAGCAACGAGCTGGGAGCAAGGCATCCAAAATCAGCATCGTTCTCCGTAACGATGGTGACCTCGATGTCGTTCATCATCGCCGTTATCT CGGCCGTCGTGATTCTAGCCTTCCGTAACGTCATTAGCTACATCTTCACCGATGGGGAGACGGTTGCCGCCGCGGTGTCGGATCTCTGCCCGCTCCTCGC AATCACCTTGGTCCTTAACGGGATCCAGCCTGTTTTATCAGGTGTCGCTGTCGGGTGTGGATGGCAAGCGTTTGTGGCGTACGTCAACGTTGGTTGCTAC TATGTGATCGGAATCCCGCTTGGGGTTTTTTTCGGTTTCTGTCTCGATTTTGGTGCTAAGGGTATATGGGCGGGGATGATCGGAGGGACAATATTGCAAA CAATGATATTGTTGTGGGTGACGTTCAGGACGGATTGGGAGAAAGAGGTAGAAGAGTCATTGAATAGATTGAACAAGTGGGACGAGAAAAAGCAACCGCT CCTCGAATGA
AA sequence Show only first row Show all	>Lus10039673 pacid=23165093 polypeptide=Lus10039673 locus=Lus10039673.g ID=Lus10039673.BGIv1.0 annot-version=v1.0 MASSPNGDLTQPLVAEPLPATPKSSLMPAPPPHHGSNELENVLSDTSMPFGDRLKRATCIESKLLFHLAAPAVIVYMINYLMSMSTQIFAGHLGNLELAA ASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAQKYKMLGVYLQRSTILLTLTGILLALLYIFSKPILILLGESPEIASAASIFVYGLIPQIFAYAVNFP IQKYLQAQSIVAPSAYISVFTLGIHVVLSYVAIYKLGMGLLGASLVLSLSWWIVVAAQFVILVLIAGLLPDPELALDSLSVCMTISGWVFMISVGFNAAA SVRVSNELGARHPKSASFSVTMVTSMSFIIAVISAVVILAFRNVISYIFTDGETVAAAVSDLCPLLAITLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCY YVIGIPLGVFFGFCLDFGAKGIWAGMIGGTILQTMILLWVTFRTDWEKEVEESLNRLNKWDEKKQPLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	3.7	0.9479
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	4.0	0.9296
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	5.7	0.9298
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10026398 [exp]	6.2	0.8970
					Lus10020564 [exp]	7.5	0.9332
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	9.6	0.8824
					Lus10036436 [exp]	11.8	0.9096
AT3G53810			Concanavalin A-like lectin pro...		Lus10004980 [exp]	19.1	0.8859
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	19.3	0.9075
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	23.5	0.8918

Compare expression of checked genes

Lus10039673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.