Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 377 / 1e-125 MATE efflux family protein (.1) AT1G61890 336 / 8e-110 MATE efflux family protein (.1) AT1G11670 326 / 8e-106 MATE efflux family protein (.1) AT4G21910 286 / 4e-90 MATE efflux family protein (.1.2.3.4) AT4G21903 268 / 1e-83 MATE efflux family protein (.1.2) AT3G59030 251 / 1e-76 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT3G26590 247 / 1e-75 MATE efflux family protein (.1) AT5G38030 244 / 3e-74 MATE efflux family protein (.1) AT1G12950 236 / 3e-71 RSH2 root hair specific 2 (.1) AT1G47530 223 / 2e-66 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027169 [exp] 371 / 6e-123 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 350 / 8e-115 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 342 / 6e-112 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 333 / 2e-108 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 324 / 5e-105 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 290 / 4e-92 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10036854 [exp] 251 / 9e-77 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 251 / 1e-76 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 239 / 2e-72 AT5G65380 705 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153100 [exp] 380 / 1e-126 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 368 / 4e-122 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 362 / 6e-120 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 359 / 9e-119 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 357 / 8e-118 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 347 / 1e-113 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 344 / 1e-112 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 339 / 1e-110 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 337 / 5e-110 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.002G055100 [exp] 258 / 2e-79 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10039675 pacid=23165340 polypeptide=Lus10039675 locus=Lus10039675.g ID=Lus10039675.BGIv1.0 annot-version=v1.0 ATGGCCGCGGATAATCACCACCACCACCACTCCTCCGACTCAATAACACCTCCTCCGCCGCTCCTTCCGCGGCTGTCGTCTTCGGTGTCCTCGTTCAACG CTGAAGCCAGCGAGGAGCTCGAGCGGAAGCTCTCCGACCGGTCCATCTCGGTTCTAAGGCGGCTGAGTTCCGCAGCGTGGATCGAGTTCAAGCTCCTTTC GTACCTCGCCGCACCCTCCATTTTCATCTACGTCACCGGATACATGATGTCCATGTCCACCCAGATGTTCTCCGGCCACCTCGGCAACCTCGAGCTCGCC GGCGCTTCCCTTGGTAACAACGGAATCCAGCTCTTCGCCTACGGCATCATGTGGGGGCTAGGGAGCGCGGTGGAGACACTATGCGGGCAAGCATACGGGG CCCAAAAGTACGAAATGCTAGGAGTATACCTTCAACGCTCTGTGGTCCTCCTCTCCCTCGTTGGGGTGGGCCTAACGTTCCTCTACGTCTTCTCGAAGCC GATCCTCATGGTCCTAGGCCAGACCGAGGAGATAGCCTCAGTAGCGGGGCTATACGTGCTCGGCCTGATCCCACAAATCTTTGCCTACGCGGCCAACTTC CCCATCCAGAAATTCCTACAGGCGCAGAGCATCGTGATGCCCAACGCCTACATCTCCGTAGGGGTGCTGGCGGTCCACCTCGGGATGAGCTGGGTCGTGA CCTACAAGCTCGGGGTGGGCCTGCTCGGGGCTTCCTTAGTTCTCAGCCTGTCGTGGTGGCTTGTGATCGCGCTCCAGTTCTGGTACGTCGTGAAAAGCGA GACTTGTCGGTACACGTGGGCCGGGTTCTCGGTTCAGGCTTTTCATGGGCTTTGGGATTTCTTCAAGCTTTCGGCGGCTTCTGCCGTCATGTTGGCTCTT GAGAATTGGTACTTCGATGTTCTTGTCTTGATTGCCGGGATGCTCGATAACCCGGAGTTGTCCTTGGATTCTCTCTCCATTTGCATGACATTGATGGGTT GGTTCTTCATGATTTCGATGGGGTTCAATGCTGCTGCAAGTGAAGGTGTGGCAGTTGGGTGCGGGTGGCAAGCATTTGTGGCGTGGGTGAATGTGATTTG TTACTATGTGGTTGGAGTCCCGCTTGGAGTGCTTCTTGGTTTCTATTTCGAGCTCGGCGCCAAGGGAATATGGTCCGGTTTGCTGGCCGGTACGGTTACT CAAACCCTTATCCTCTTATGGGTAACGTATCGAACCGATTGGAAGAAGGAATTCGGAATGGGGAGCGCGGTGGAGACACCATGCGGACAAGTTGTACGGA GCCCAAAAGTACGAAATGCTCGGAATATACCTCCAACCGTCAACGATCCTCCACTCCCTGACGGCGTCGGACTTTCAGTCATCTATATCTTATCCAAACC AATCTTAATACTCATCGGCCAGTCACCGAAGATAGCTTCCGCCTGCGCAGACTTCATGTACGGTCTGATCCCGGAGATCTTCGCCTGCGCGGTCAACTTC CCCGTCCAGAAATTCCTCCAGGAGCAGAGCATTGTGGCCCCCACCGCCTACATATCCGCCGCCGTGCCGGTGGGTCCCGCTTTTTTAGAGATAAACAATT TGGCAACTTAA
AA sequence Show only first row Show all	>Lus10039675 pacid=23165340 polypeptide=Lus10039675 locus=Lus10039675.g ID=Lus10039675.BGIv1.0 annot-version=v1.0 MAADNHHHHHSSDSITPPPPLLPRLSSSVSSFNAEASEELERKLSDRSISVLRRLSSAAWIEFKLLSYLAAPSIFIYVTGYMMSMSTQMFSGHLGNLELA GASLGNNGIQLFAYGIMWGLGSAVETLCGQAYGAQKYEMLGVYLQRSVVLLSLVGVGLTFLYVFSKPILMVLGQTEEIASVAGLYVLGLIPQIFAYAANF PIQKFLQAQSIVMPNAYISVGVLAVHLGMSWVVTYKLGVGLLGASLVLSLSWWLVIALQFWYVVKSETCRYTWAGFSVQAFHGLWDFFKLSAASAVMLAL ENWYFDVLVLIAGMLDNPELSLDSLSICMTLMGWFFMISMGFNAAASEGVAVGCGWQAFVAWVNVICYYVVGVPLGVLLGFYFELGAKGIWSGLLAGTVT QTLILLWVTYRTDWKKEFGMGSAVETPCGQVVRSPKVRNARNIPPTVNDPPLPDGVGLSVIYILSKPILILIGQSPKIASACADFMYGLIPEIFACAVNF PVQKFLQEQSIVAPTAYISAAVPVGPAFLEINNLAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	0	1
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	2.0	0.9073
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	4.0	0.8989
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	5.2	0.8916
AT5G67350			unknown protein		Lus10010401 [exp]	7.1	0.8855
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	7.7	0.8851
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	8.2	0.8866
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	9.2	0.8605
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	9.4	0.8514
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	11.8	0.8779
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	13.8	0.8709

Compare expression of checked genes

Lus10039675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.